Feature/adjacency metric#94
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- Move calculate_adjacency_score into R/calculate_adjacency_score.R alongside new adjacency_score_vec / ring_offsets / shift_pad helpers - Add ring_dists, ring_weights, ring_type args (defaults preserve old behaviour) - objective_function forwards ring_* args from ... so they reach the SA path - Cover ring offsets, shift padding, per-ring weighting, and end-to-end speed() integration in tests Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- Note adjacency ring args in NEWS - Ignore stray Rplots.pdf Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
dx now shifts columns (x-axis) and dy now shifts rows (y-axis), aligning with conventional usage. Ring offsets and the shift_pad test follow. Behaviour unchanged because rings are symmetric in dx/dy. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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