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@brinkmanlab

Brinkman Lab - Simon Fraser University

Bioinformatics and genomics research lab, aiming to better control infectious diseases in a sustainable way.

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  1. GenomeD3Plot GenomeD3Plot Public

    Forked from lairdm/islandplot

    SVG based genome viewer written in javascript using D3

    JavaScript 69 16

  2. islandpath islandpath Public

    IslandPath standalone software

    Perl 36 5

  3. psortb_commandline_docker psortb_commandline_docker Public

    PSORTb command-line docker - Dockerfile and "docker run" wrapper

    Perl 8 6

  4. psortb-docker psortb-docker Public

    Forked from lairdm/psortb-docker

    Docker build environment for PSORTb

    Dockerfile 5

  5. IslandCompare IslandCompare Public

    Pipeline for detecting and annotating genomic islands and relationships between the respective genomes

    Vue 4 2

  6. BioPython-Convert BioPython-Convert Public

    Tool to interconvert between various bioinformatics formats that BioPython supports

    Roff 4 2

Repositories

Showing 10 of 59 repositories
  • iMicroSeqDataPortal_Dashboard Public Forked from bfjia/iMicroSeq_Dashboard

    iMicroSeq Data Portal visualization dashboard

    brinkmanlab/iMicroSeqDataPortal_Dashboard’s past year of commit activity
    JavaScript 0 MIT 1 0 0 Updated Apr 9, 2026
  • brinkmanlab/irida-plugin-chewbbaca’s past year of commit activity
    Java 0 0 0 1 Updated Mar 27, 2026
  • psortb_commandline_docker Public

    PSORTb command-line docker - Dockerfile and "docker run" wrapper

    brinkmanlab/psortb_commandline_docker’s past year of commit activity
    Perl 8 6 5 0 Updated Mar 24, 2026
  • IslandCompare Public

    Pipeline for detecting and annotating genomic islands and relationships between the respective genomes

    brinkmanlab/IslandCompare’s past year of commit activity
    Vue 4 2 39 (2 issues need help) 20 Updated Dec 16, 2025
  • cloud_recipes Public

    Kubernetes deployment recipies for various third party cloud providers

    brinkmanlab/cloud_recipes’s past year of commit activity
    HCL 0 MIT 0 8 0 Updated Oct 17, 2025
  • galaxy-container Public

    Galaxy container generation and cloud deployment recipes. Uses Buildah, Ansible, and Terraform.

    brinkmanlab/galaxy-container’s past year of commit activity
    HCL 0 MIT 0 25 0 Updated Oct 9, 2025
  • islandviewer-ui Public Forked from lairdm/islandviewer-ui

    Web UI for Islandviewer

    brinkmanlab/islandviewer-ui’s past year of commit activity
    HTML 1 GPL-3.0 3 0 0 Updated Aug 26, 2025
  • Duotang_Archive Public

    Archive repo for CoVaRR-Net's Duotang SARS-CoV-2 Notebooks

    brinkmanlab/Duotang_Archive’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 16, 2024
  • BioPython-Convert Public

    Tool to interconvert between various bioinformatics formats that BioPython supports

    brinkmanlab/BioPython-Convert’s past year of commit activity
    Roff 4 2 2 1 Updated Jul 4, 2024
  • islandpath Public

    IslandPath standalone software

    brinkmanlab/islandpath’s past year of commit activity
    Perl 36 GPL-3.0 5 10 1 Updated Nov 7, 2023

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