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Error in Variantfilteation result

Status: Open.

#17 In broadinstitute/mutect;

· Rofidagamal opened on Mar 13, 2023

ERROR report about the Mutect1.1.7

Status: Open.

#14 In broadinstitute/mutect;

· MenglinC opened on Jun 21, 2021

Error installing due to maven repository change from HTTP to HTTPS this year

Status: Open.

#13 In broadinstitute/mutect;

· mcru4104 opened on Feb 11, 2020

Try to find the strand_bias_counts definition?

Status: Open.

#12 In broadinstitute/mutect;

· ipstone opened on Jun 26, 2018

Is it possible to provide documentation/overview of "logic to skip variant sites that are very clearly germline based on the evidence present in the Normal sample compared to the Tumor sample. This is done at an early stage to avoid spending computational resources on germline events"? Thanks!

Status: Open.

#11 In broadinstitute/mutect;

· kiranchari opened on Dec 27, 2017

mutect problem -- Malformed walker argument: Could not find walker with name: MuTect

Status: Open.

#10 In broadinstitute/mutect;

· xiaxuyang opened on May 4, 2016

mutect writes logging info to STDOUT

Status: Open.

#9 In broadinstitute/mutect;

· brentp opened on Nov 2, 2015

Could not read from remote repository. gatk-protected.git

Status: Open.

#7 In broadinstitute/mutect;

· 2007lab opened on Aug 5, 2015

MuTect 1.1.7 reported version

Status: Open.

#6 In broadinstitute/mutect;

· igordot opened on Jun 24, 2015

Report MuTect version instead of GATK version when --version is passed

Status: Open.

#5 In broadinstitute/mutect;

· lbeltrame opened on Sep 12, 2013