change protobuf

[lbeckman314]

Overview 🌀

Updates to Funnel Plugin code with updated Protobuf definitions and improved Developer Experience with Makefile improvements.

Credits 🙌

All updates in this PR were made possible by @matthewpeterkort and the Ellrott Lab at OHSU — thank you!

See README.md

Changes proto response to return a proto response structure:
https://github.com/ohsu-comp-bio/funnel/blob/feature/plugins/plugins/proto/plugin.proto#L16-L21

Simplifies config. Passes Task, Config from funnel, to plugin, to test server, back to plugin.

Passes all headers to plugin, test server.

[Copilot]

Pull Request Overview

This PR updates the protobuf definitions and the corresponding generated code, and aligns the server test code with the new protobuf structure.

• Updated tests/test-server.go to use a command-line flag for specifying the CSV file and to set AWS configuration fields consistently.
• Modified proto/auth.proto to replace the simple 'user' and 'host' fields with 'headers' and 'params' map fields.
• Regenerated protobuf files in Go and Python to reflect the updated schema.

Reviewed Changes

Copilot reviewed 5 out of 6 changed files in this pull request and generated 1 comment.

File	Description
tests/test-server.go	Introduces CSV file flag and updates AWS configuration assignment in tokenHandler.
proto/auth.proto	Replaces string fields with map fields in GetRequest, updating field numbers accordingly.
proto/auth.pb.go	Regenerated code reflecting the new GetRequest structure with map entries.
plugin-python/proto/auth_pb2.py	Updated generated Python protobuf file to match the changes in auth.proto.

Files not reviewed (1)

• Makefile: Language not supported

Comments suppressed due to low confidence (1)

proto/auth.pb.go:26

• [nitpick] This generated code has been updated to match the new proto definition. Please verify that your protobuf generation toolchain is correctly configured to handle the updated schema changes.

Headers       map[string]string      `protobuf:"bytes,3,rep,name=headers,proto3" json:"headers,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`