Name	Name	Last commit message	Last commit date
Latest commit History 5,762 Commits
KL-Divergence	KL-Divergence
R-plots	R-plots
cir1_ecceTERA_analysis	cir1_ecceTERA_analysis
cir1_ecceTERA_output	cir1_ecceTERA_output
events_locations	events_locations
gene_alignments	gene_alignments
habitat-prediction	habitat-prediction
iqtree_gene_trees	iqtree_gene_trees
ln3_ecceTERA_analysis	ln3_ecceTERA_analysis
ln3_ecceTERA_output	ln3_ecceTERA_output
phylum-level-reconstruction	phylum-level-reconstruction
scripts	scripts
specific_substrates	specific_substrates
ugam1_ecceTERA_analysis	ugam1_ecceTERA_analysis
ugam1_ecceTERA_output	ugam1_ecceTERA_output
.DS_Store	.DS_Store
.gitignore	.gitignore
COG_align.csv	COG_align.csv
COG_reconciliation_summary_cir1.csv	COG_reconciliation_summary_cir1.csv
COG_reconciliation_summary_ln3.csv	COG_reconciliation_summary_ln3.csv
COG_reconciliation_summary_ugam1.csv	COG_reconciliation_summary_ugam1.csv
README.md	README.md
Rplots.pdf	Rplots.pdf
allGeneBirthDate-baross.its.carleton.edu.txt	allGeneBirthDate-baross.its.carleton.edu.txt
check-summary.sh	check-summary.sh
cir1_ChenParamsEarth_sample.chronogram	cir1_ChenParamsEarth_sample.chronogram
deepNOG_COG_count.txt	deepNOG_COG_count.txt
diamond_COG_count.txt	diamond_COG_count.txt
dispatch-COGs.sh	dispatch-COGs.sh
eceeTERA-exit-code.tmp	eceeTERA-exit-code.tmp
environment_setup.log	environment_setup.log
ln3_ChenParamsEarth_sample.chronogram	ln3_ChenParamsEarth_sample.chronogram
memory_usage_baross.log	memory_usage_baross.log
memory_usage_deming.log	memory_usage_deming.log
monitor_memory.sh	monitor_memory.sh
muscle5.1	muscle5.1
output.txt	output.txt
reconcile.sh	reconcile.sh
reconcile_corrected.sh	reconcile_corrected.sh
reconcile_tree_software_design.pptx	reconcile_tree_software_design.pptx
reconcile_updated_trimming.sh	reconcile_updated_trimming.sh
run_dispatch_screens.sh	run_dispatch_screens.sh
speciationEvents43GYA.csv	speciationEvents43GYA.csv
speciationEvents44GYA.csv	speciationEvents44GYA.csv
tmp_cir1	tmp_cir1
tmp_cugam1	tmp_cugam1
ugam1_ChenParamsEarth_sample.chronogram	ugam1_ChenParamsEarth_sample.chronogram
unit-test.sh	unit-test.sh
~.bashrc	~.bashrc

Name

Last commit message

Last commit date

5,762 Commits

KL-Divergence

R-plots

cir1_ecceTERA_analysis