Supporting Information

Instructions for running the data-preprocessor workflow

1. Navigate to the data-preprocessor folder:

   cd data-preprocessor

2. Copy the files sc-transcriptomics-cell-summaries.top10k.jsonl.gz and sc-transcriptomics-cell-instances.csv.gz into the raw-data (create it if need be) and input folders, respectively.

3. Create the virtual environment and install dependencies

	python setup_and_run.py

4. Activate the virtual environment

source .venv/bin/activate

5. Deactivate when finished

deactivate