v1.7.6 🌈

Changes

• Some updates to tracking with trackastra and add test for automatic tracking @constantinpape (#1185)
• Raise meaningful error message for missing trackastra package @anwai98 (#1184)
• Update RELEASE_OVERVIEW.md @anwai98 (#1177)

v1.7.5 🌈

Changes

• Dev @constantinpape (#1175)

v1.7.4 🌈

Changes

• Dev @constantinpape (#1173)

v1.7.3 🌈

Changes

• Make activation in UNETR flexble @constantinpape (#1172)

v1.7.2 🌈

Changes

• Bump version @constantinpape (#1171)
• Extended masking support @constantinpape (#1170)
• Add exclusive argument for loading separate decoder paths @anwai98 (#1166)
• Add new FAQ for pytorch errors on older hardware @anwai98 (#1167)
• Merge dev to master @anwai98 (#1162)
• Update RELEASE_OVERVIEW.md @anwai98 (#1159)
• Minor typo fixes @anwai98 (#1158)

🐛 Bug Fixes

• Minor fix to fetching layers attrbute from running viewer @anwai98 (#1165)

v1.7.1 🌈

Changes

• Bump version @anwai98 (#1157)
• Add script for statistical analysis WIP @constantinpape (#1155)
• Update return values for trackastra model inference @anwai98 (#1156)
• Minor bug fix to return outputs for APG @anwai98 (#1154)
• Add APG outputs for automatic segmentation example notebook @anwai98 (#1148)
• Merge dev to master @anwai98 (#1146)
• Minor typo fix in doc @anwai98 (#1144)
• Add APG to documentation @anwai98 (#1143)
• Update RELEASE_OVERVIEW.md @anwai98 (#1138)

🐛 Bug Fixes

• Added is_seg_dataset parameter in training.training.default_sam_dataset() @Sagnik700 (#1147)

v1.7.0 🌈

This release contains several improvements to automatic instance segmentation and other features. As part of these improvements micro_sam.instance_segmentation.get_amg was renamed to micro_sam.instance_segmentation.get_instance_segmentation_generator.

Changes

• Release 1.7 @constantinpape (#1134)
• Add support for training from in-memory data @constantinpape (#1135)
• Automatic prompt generator @constantinpape (#1122)
• Update image preprocessing @constantinpape (#1133)
• Masked segmentation @constantinpape (#1131)
• Refactor APG interface and instance segmentation tests @constantinpape (#1127)
• Remove additional batch size checks in training @anwai98 (#1129)
• Fix training/validation metrics scaling and validation loss aggregation @YonghaoZhao722 (#1126)
• Add support for loading initial segmentation results to series annotator @constantinpape (#1125)
• Use stability score in nms @constantinpape (#1123)
• add sam_model as attribute for torch.nn.Module magic to work @FynnBe (#1111)
• Minor fix to 3d encoder wrapper for expected model type configuration @anwai98 (#1110)
• Update RELEASE_OVERVIEW.md @anwai98 (#1109)

v1.6.2 🌈

Changes

• New release @constantinpape (#1108)
• Fix image series annotator @constantinpape (#1107)
• Add model versions and create cache directory for info CLI @anwai98 (#1106)
• Release new medical imaging models @anwai98 (#1103)
• Update RELEASE_OVERVIEW.md @anwai98 (#1098)

v1.6.1 🌈

Changes

• Bump version to 1.6.1 @constantinpape (#1097)
• Merge dev to master @anwai98 (#1091)
• Minor fix to additional arguments for training instance segmentation @anwai98 (#1096)
• Add is_multi_tensor argument to default_sam_dataset to split kwargs in loader @lufre1 (#1092)
• Update default_sam_dataset to allow parsing expected parameters @lufre1 (#1090)
• Add support scripts for training custom model @anwai98 (#1086)
• Add script for counting total images and annotated objects @anwai98 (#1082)
• Add trackastra as dependency @constantinpape (#1081)
• Update grid search functionality for more flexibility @constantinpape (#1079)
• Add new BAND site @anwai98 (#1080)
• Minor linting fixes @anwai98 (#1078)
• More doc updates @anwai98 (#1068)
• Update RELEASE_OVERVIEW.md @anwai98 (#1067)

v1.6.0 🌈

With this version we publish improved versions of the light microscopy and electron microscopy models.

Changes

• Bump version @constantinpape (#1066)
• Update embedding visualization and add support for ROIs in SAM datasets @constantinpape (#1065)
• Prepare new release @constantinpape (#1064)
• Allow support for custom label transforms in default_sam_dataset @lufre1 (#1063)
• Start preparing release for new models @anwai98 (#1061)
• Update documentation for BAND @anwai98 (#1060)
• Minor updates to EM evaluation benchmarking scripts @anwai98 (#1059)
• More zarr v3 fixes @constantinpape (#1057)
• Update RELEASE_OVERVIEW.md @anwai98 (#1055)
• Update generalist training scripts @anwai98 (#1052)
• Update environment.yaml @anwai98 (#1050)