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Meson as build system, setup documentation, formatting and other other software management#4

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JaroCamphuijsen wants to merge 64 commits into
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Meson as build system, setup documentation, formatting and other other software management#4
JaroCamphuijsen wants to merge 64 commits into
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@JaroCamphuijsen

@JaroCamphuijsen JaroCamphuijsen commented May 21, 2026

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This PR merges the fork from the NLeSC organisation into this root repository, the following changes are included:

Remove the dependency on Boost
#35 by cantordust Member was merged on May 20

Add initial citation file with authors
#33 by JaroCamphuijsen Member was merged on May 6

Apply clang-format to the existing code.
#32 by cantordust Member was merged on Apr 20

Refactor codebase to silence all compiler warnings
#27 by cantordust Member was merged on Apr 14

Added a clang-format configuration.
#26 by cantordust Member was merged on Apr 14

Added initial .gitignore file
#18 by cantordust Member was merged on Apr 14

Meson as build system
#9 by cantordust Member was merged on Apr 8

Hierarchical codebase
#8 by cantordust Member was merged on Apr 8

Setup sphinx documentation
#7 by JaroCamphuijsen Member was merged 2 weeks ago

	- Header files under `include`
	- Source files under `src`
	- Configuration files under `config`
	- Input data files under `data`
	- Other files (for now, only logos) under `assets`
	- Python files under `bindings`
TODO
====

- Update `README.md` with instructions on how to compile the source with meson.
…le and run `corticalsim3D`:

	- Updated the instructions for installing dependencies on Windows (to be verified).
	- Added instructions on setting up and compiling `corticalsim3D`.
	- Added a Run section (to be updated).
	- Note: This is a working file, it could change drastically over time.
NOTE: This needs to be refactored to eliminate initialisations inside case statements.
cantordust and others added 30 commits April 13, 2026 20:41
- Trimmed trailing whitespaces.
Added initial `.gitignore` file
Added a `clang-format` configuration.
Refactored the codebase to silence all (current) compiler warnings.
	- Added `ColumnLimit: 120`
	- Removed `IndentPPDirectives: BeforeHash`
	- Added an option to insert empty lines before and after access modifiers.
	- Added an option to automatically insert namespace comments after the closing brace.
	- Added penalties for breaking before member access and scope resolution.
	- Added a penalty for breaking up strings.
- Applied `clang-format` to the entire codebase.
Apply `clang-format` to the existing code.
Thanks for the review! These were all reasonable suggestions. Most of the text in "introduction.md" actually came from the referenced paper, so the text fixes should be in there. For me this is a placeholder anyway, as I think Eva and/or Bandan should write these parts. For now i just accepted your contributions, which made it more readable.

Co-authored-by: Alexander Hadjiivanov <43831101+cantordust@users.noreply.github.com>
Add initial citation file with authors
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2 participants