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Regenerate locks against Colab preinstalled versions #159

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Merged
bendichter merged 1 commit into from
May 13, 2026
Merged

Regenerate locks against Colab preinstalled versions #159

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653 changes: 653 additions & 0 deletions .github/colab-preinstalled.txt
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46 changes: 23 additions & 23 deletions 000108/chunglab/demo/dashboard.ipynb
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Expand Up @@ -43,16 +43,16 @@
" \"attrs==26.1.0\" \\\n",
" \"bids-validator-deno==2.4.1\" \\\n",
" \"bidsschematools==1.2.2\" \\\n",
" \"blessed==1.39.0\" \\\n",
" \"bokeh==3.9.0\" \\\n",
" \"blessed==1.38.0\" \\\n",
" \"bokeh==3.8.2\" \\\n",
" \"certifi==2026.4.22\" \\\n",
" \"cffi==2.0.0\" \\\n",
" \"charset-normalizer==3.4.7\" \\\n",
" \"ci-info==0.4.0\" \\\n",
" \"click==8.1.8\" \\\n",
" \"click-didyoumean==0.3.1\" \\\n",
" \"contourpy==1.3.3\" \\\n",
" \"cryptography==48.0.0\" \\\n",
" \"cryptography==43.0.3\" \\\n",
" \"cycler==0.12.1\" \\\n",
" \"dandi==0.75.1\" \\\n",
" \"dandischema==0.12.1\" \\\n",
Expand All @@ -65,12 +65,12 @@
" \"fqdn==1.5.1\" \\\n",
" \"frozenlist==1.8.0\" \\\n",
" \"fscacher==0.4.4\" \\\n",
" \"fsspec==2026.4.0\" \\\n",
" \"fsspec==2025.3.0\" \\\n",
" \"h5py==3.16.0\" \\\n",
" \"hdmf==4.3.1\" \\\n",
" \"hdmf-zarr==0.12.0\" \\\n",
" \"humanize==4.15.0\" \\\n",
" \"idna==3.14\" \\\n",
" \"idna==3.13\" \\\n",
" \"interleave==0.3.0\" \\\n",
" \"isodate==0.7.2\" \\\n",
" \"isoduration==20.11.0\" \\\n",
Expand All @@ -87,34 +87,34 @@
" \"keyrings-alt==5.0.2\" \\\n",
" \"kiwisolver==1.5.0\" \\\n",
" \"markupsafe==3.0.3\" \\\n",
" \"matplotlib==3.10.9\" \\\n",
" \"matplotlib==3.10.0\" \\\n",
" \"ml-dtypes==0.5.4\" \\\n",
" \"more-itertools==11.0.2\" \\\n",
" \"more-itertools==10.8.0\" \\\n",
" \"multidict==6.7.1\" \\\n",
" \"narwhals==2.21.0\" \\\n",
" \"narwhals==2.20.0\" \\\n",
" \"natsort==8.4.0\" \\\n",
" \"numcodecs==0.15.1\" \\\n",
" \"numpy==2.4.4\" \\\n",
" \"numpy==2.0.2\" \\\n",
" \"nwbinspector==0.7.1\" \\\n",
" \"packaging==26.2\" \\\n",
" \"pandas==2.3.3\" \\\n",
" \"pillow==12.2.0\" \\\n",
" \"packaging==26.1\" \\\n",
" \"pandas==2.2.2\" \\\n",
" \"pillow==11.3.0\" \\\n",
" \"platformdirs==4.9.6\" \\\n",
" \"propcache==0.5.2\" \\\n",
" \"propcache==0.4.1\" \\\n",
" \"pycparser==3.0\" \\\n",
" \"pycryptodomex==3.23.0\" \\\n",
" \"pydantic==2.13.4\" \\\n",
" \"pydantic-core==2.46.4\" \\\n",
" \"pydantic-settings==2.14.1\" \\\n",
" \"pydantic==2.12.3\" \\\n",
" \"pydantic-core==2.41.4\" \\\n",
" \"pydantic-settings==2.14.0\" \\\n",
" \"pynwb==3.1.3\" \\\n",
" \"pyout==0.8.1\" \\\n",
" \"pyparsing==3.3.2\" \\\n",
" \"python-dateutil==2.9.0.post0\" \\\n",
" \"python-dotenv==1.2.2\" \\\n",
" \"pytz==2026.2\" \\\n",
" \"pytz==2025.2\" \\\n",
" \"pyyaml==6.0.3\" \\\n",
" \"referencing==0.37.0\" \\\n",
" \"requests==2.34.0\" \\\n",
" \"requests==2.32.4\" \\\n",
" \"rfc3339-validator==0.1.4\" \\\n",
" \"rfc3987==1.3.8\" \\\n",
" \"rpds-py==0.30.0\" \\\n",
Expand All @@ -124,16 +124,16 @@
" \"semantic-version==2.10.0\" \\\n",
" \"six==1.17.0\" \\\n",
" \"tenacity==9.1.4\" \\\n",
" \"tensorstore==0.1.83\" \\\n",
" \"tensorstore==0.1.82\" \\\n",
" \"threadpoolctl==3.6.0\" \\\n",
" \"tornado==6.5.5\" \\\n",
" \"tornado==6.5.1\" \\\n",
" \"tqdm==4.67.3\" \\\n",
" \"typing-extensions==4.15.0\" \\\n",
" \"typing-inspection==0.4.2\" \\\n",
" \"tzdata==2026.2\" \\\n",
" \"tzdata==2026.1\" \\\n",
" \"uri-template==1.3.0\" \\\n",
" \"urllib3==2.7.0\" \\\n",
" \"wcwidth==0.7.0\" \\\n",
" \"urllib3==2.5.0\" \\\n",
" \"wcwidth==0.6.0\" \\\n",
" \"webcolors==25.10.0\" \\\n",
" \"wrapt==2.1.2\" \\\n",
" \"xyzservices==2026.3.0\" \\\n",
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67 changes: 32 additions & 35 deletions 000402/MICrONS/demo/000402_microns_demo.ipynb
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Expand Up @@ -40,13 +40,12 @@
" \"annotated-types==0.7.0\" \\\n",
" \"arrow==1.4.0\" \\\n",
" \"asciitree==0.3.3\" \\\n",
" \"asttokens==3.0.1\" \\\n",
" \"attrs==26.1.0\" \\\n",
" \"backcall==0.2.0\" \\\n",
" \"bids-validator-deno==2.4.1\" \\\n",
" \"bidsschematools==1.2.2\" \\\n",
" \"blessed==1.39.0\" \\\n",
" \"bqplot==0.13.1\" \\\n",
" \"bqscales==0.3.7\" \\\n",
" \"blessed==1.38.0\" \\\n",
" \"bqplot==0.12.45\" \\\n",
" \"certifi==2026.4.22\" \\\n",
" \"cffi==2.0.0\" \\\n",
" \"charset-normalizer==3.4.7\" \\\n",
Expand All @@ -55,38 +54,36 @@
" \"click-didyoumean==0.3.1\" \\\n",
" \"comm==0.2.3\" \\\n",
" \"contourpy==1.3.3\" \\\n",
" \"cryptography==48.0.0\" \\\n",
" \"cryptography==43.0.3\" \\\n",
" \"cycler==0.12.1\" \\\n",
" \"dandi==0.74.3\" \\\n",
" \"dandischema==0.12.1\" \\\n",
" \"decorator==5.2.1\" \\\n",
" \"decorator==4.4.2\" \\\n",
" \"deprecated==1.3.1\" \\\n",
" \"dnspython==2.8.0\" \\\n",
" \"email-validator==2.3.0\" \\\n",
" \"etelemetry==0.3.1\" \\\n",
" \"executing==2.2.1\" \\\n",
" \"fasteners==0.20\" \\\n",
" \"fonttools==4.62.1\" \\\n",
" \"fqdn==1.5.1\" \\\n",
" \"frozenlist==1.8.0\" \\\n",
" \"fscacher==0.4.4\" \\\n",
" \"fsspec==2026.4.0\" \\\n",
" \"fsspec==2025.3.0\" \\\n",
" \"gast==0.7.0\" \\\n",
" \"h5py==3.16.0\" \\\n",
" \"hdmf==3.14.6\" \\\n",
" \"hdmf-zarr==0.11.3\" \\\n",
" \"humanize==4.15.0\" \\\n",
" \"idna==3.14\" \\\n",
" \"idna==3.13\" \\\n",
" \"imageio==2.37.3\" \\\n",
" \"importlib-metadata==4.13.0\" \\\n",
" \"interleave==0.3.0\" \\\n",
" \"ipydatagrid==1.4.0\" \\\n",
" \"ipydatawidgets==4.3.2\" \\\n",
" \"ipyfilechooser==0.6.0\" \\\n",
" \"ipympl==0.10.0\" \\\n",
" \"ipython==9.13.0\" \\\n",
" \"ipython==7.34.0\" \\\n",
" \"ipython-genutils==0.2.0\" \\\n",
" \"ipython-pygments-lexers==1.1.1\" \\\n",
" \"ipyvolume==0.6.3\" \\\n",
" \"ipyvue==1.12.0\" \\\n",
" \"ipyvuetify==1.11.3\" \\\n",
Expand All @@ -108,72 +105,72 @@
" \"keyrings-alt==5.0.2\" \\\n",
" \"kiwisolver==1.5.0\" \\\n",
" \"lazy-loader==0.5\" \\\n",
" \"matplotlib==3.10.9\" \\\n",
" \"matplotlib-inline==0.2.2\" \\\n",
" \"matplotlib==3.10.0\" \\\n",
" \"matplotlib-inline==0.2.1\" \\\n",
" \"ml-dtypes==0.5.4\" \\\n",
" \"more-itertools==11.0.2\" \\\n",
" \"more-itertools==10.8.0\" \\\n",
" \"multidict==6.7.1\" \\\n",
" \"natsort==8.4.0\" \\\n",
" \"ndx-grayscalevolume==0.0.2\" \\\n",
" \"ndx-icephys-meta==0.1.0\" \\\n",
" \"ndx-spectrum==0.2.2\" \\\n",
" \"networkx==3.6.1\" \\\n",
" \"numcodecs==0.15.1\" \\\n",
" \"numpy==2.4.4\" \\\n",
" \"numpy==2.0.2\" \\\n",
" \"nwbinspector==0.6.3\" \\\n",
" \"nwbwidgets==0.11.3\" \\\n",
" \"packaging==26.2\" \\\n",
" \"pandas==3.0.3\" \\\n",
" \"parso==0.8.7\" \\\n",
" \"packaging==26.1\" \\\n",
" \"pandas==2.2.2\" \\\n",
" \"parso==0.8.6\" \\\n",
" \"pexpect==4.9.0\" \\\n",
" \"pillow==12.2.0\" \\\n",
" \"pickleshare==0.7.5\" \\\n",
" \"pillow==11.3.0\" \\\n",
" \"platformdirs==4.9.6\" \\\n",
" \"plotly==5.13.1\" \\\n",
" \"prompt-toolkit==3.0.52\" \\\n",
" \"propcache==0.5.2\" \\\n",
" \"psutil==7.2.2\" \\\n",
" \"propcache==0.4.1\" \\\n",
" \"ptyprocess==0.7.0\" \\\n",
" \"pure-eval==0.2.3\" \\\n",
" \"py2vega==0.7.0\" \\\n",
" \"pycparser==3.0\" \\\n",
" \"pycryptodomex==3.23.0\" \\\n",
" \"pydantic==2.13.4\" \\\n",
" \"pydantic-core==2.46.4\" \\\n",
" \"pydantic-settings==2.14.1\" \\\n",
" \"pydantic==2.12.3\" \\\n",
" \"pydantic-core==2.41.4\" \\\n",
" \"pydantic-settings==2.14.0\" \\\n",
" \"pygments==2.20.0\" \\\n",
" \"pynwb==2.8.3\" \\\n",
" \"pyout==0.8.1\" \\\n",
" \"pyparsing==3.3.2\" \\\n",
" \"python-dateutil==2.9.0.post0\" \\\n",
" \"python-dotenv==1.2.2\" \\\n",
" \"pythreejs==2.4.2\" \\\n",
" \"pytz==2025.2\" \\\n",
" \"pyyaml==6.0.3\" \\\n",
" \"referencing==0.37.0\" \\\n",
" \"requests==2.34.0\" \\\n",
" \"requests==2.32.4\" \\\n",
" \"rfc3339-validator==0.1.4\" \\\n",
" \"rfc3987==1.3.8\" \\\n",
" \"rpds-py==0.30.0\" \\\n",
" \"ruamel-yaml==0.19.1\" \\\n",
" \"scikit-image==0.26.0\" \\\n",
" \"scipy==1.17.1\" \\\n",
" \"scikit-image==0.25.2\" \\\n",
" \"scipy==1.16.3\" \\\n",
" \"secretstorage==3.5.0\" \\\n",
" \"semantic-version==2.10.0\" \\\n",
" \"setuptools==75.2.0\" \\\n",
" \"six==1.17.0\" \\\n",
" \"stack-data==0.6.3\" \\\n",
" \"tenacity==9.1.4\" \\\n",
" \"tensorstore==0.1.83\" \\\n",
" \"tensorstore==0.1.82\" \\\n",
" \"threadpoolctl==3.6.0\" \\\n",
" \"tifffile==2026.5.2\" \\\n",
" \"tifffile==2026.4.11\" \\\n",
" \"tqdm==4.67.3\" \\\n",
" \"traitlets==5.15.0\" \\\n",
" \"traitlets==5.7.1\" \\\n",
" \"traittypes==0.2.3\" \\\n",
" \"trimesh==4.12.2\" \\\n",
" \"typing-extensions==4.15.0\" \\\n",
" \"typing-inspection==0.4.2\" \\\n",
" \"tzdata==2026.2\" \\\n",
" \"tzdata==2026.1\" \\\n",
" \"uri-template==1.3.0\" \\\n",
" \"urllib3==2.7.0\" \\\n",
" \"wcwidth==0.7.0\" \\\n",
" \"urllib3==2.5.0\" \\\n",
" \"wcwidth==0.6.0\" \\\n",
" \"webcolors==25.10.0\" \\\n",
" \"widgetsnbextension==4.0.15\" \\\n",
" \"wrapt==2.1.2\" \\\n",
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