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1e028c2
update foramecogem: ecogem_data.f90
ruiying-ocean Jun 15, 2023
ebf408b
update foramecogem: ecogem.f90
ruiying-ocean Jun 15, 2023
f0ac216
udpate foramecogem: ecogem_lib.f90
ruiying-ocean Jun 15, 2023
74bafda
update foramecogem: init_ecogem.f90
ruiying-ocean Jun 15, 2023
24401a7
update foramecogem: definition.xml
ruiying-ocean Jun 15, 2023
1b0b057
update foramecogem: change parameter names
ruiying-ocean Jun 15, 2023
3acdd1f
Add foramecogem user-configs
ruiying-ocean Jun 15, 2023
56cda80
debug, remove whitespace
ruiying-ocean Jun 16, 2023
68b0b50
debug: declaration and numerical feeding (herbivory/carnivory real)
ruiying-ocean Jun 16, 2023
ce0598c
all debug done!
ruiying-ocean Jun 16, 2023
de42f61
update user-configs
ruiying-ocean Jun 16, 2023
4d59ea9
remove numerical_feeding!
ruiying-ocean Jun 16, 2023
d3fd01b
correct foram names
ruiying-ocean Jun 16, 2023
3b508ca
again remove ctrl_numerical_feeding
ruiying-ocean Jun 16, 2023
c8b14cf
update foramecogem.zoo grazing file
ruiying-ocean Jun 16, 2023
3128c38
Add hetero_diameter
ruiying-ocean Jun 16, 2023
67dc03a
fix a typo: diameter
ruiying-ocean Jun 16, 2023
215262f
move the namelist in ecogem_lib.f90 together
ruiying-ocean Jun 16, 2023
288ce46
remove eg_ctrl_numerical_feeding in user-config
ruiying-ocean Jun 16, 2023
a0714f8
debug: add for loop in init foram parameters
ruiying-ocean Jun 16, 2023
b26fa0b
debug: move init_array out of loop
ruiying-ocean Jun 16, 2023
c48bf39
rename to foramecogem2.2
ruiying-ocean Jun 16, 2023
c7e3204
adjust spinose foram volume
ruiying-ocean Jun 16, 2023
6f3c1bc
auto_volume in Si
ruiying-ocean Jun 16, 2023
fb56fbf
Merge branch 'master' of https://github.com/derpycode/cgenie.muffin i…
ruiying-ocean Jun 17, 2023
60683f6
a new subroutine: sub_init_explicit_rich_grazing_params
ruiying-ocean Jun 17, 2023
ec66de0
no more numerical herb/carni, it's not meaningful
ruiying-ocean Jun 17, 2023
127091a
fix a bug cause by if-then
ruiying-ocean Jun 17, 2023
7c7e18d
VERIFIED: herbivory don't eat zooplankton
ruiying-ocean Jun 17, 2023
f95bda1
apply hetero volume, but just for grazing (not prey selection)
ruiying-ocean Jun 17, 2023
32c2715
change the name grazing_esd_scale to spine_esd_scale
ruiying-ocean Jun 17, 2023
3e51d09
update more spine-related variable name
ruiying-ocean Jun 17, 2023
13d04bf
enable omnivory for foram
ruiying-ocean Jun 18, 2023
ba0b3f2
Merge branch 'master' of https://github.com/derpycode/cgenie.muffin i…
ruiying-ocean Jul 1, 2023
4ffe14f
make symbiont and spine trait universal for groups
ruiying-ocean Jul 1, 2023
e3981da
mechanistic spine effect: influence Gm and kg
ruiying-ocean Jul 1, 2023
c00c824
update foramecogem usr-configs as code changed
ruiying-ocean Jul 1, 2023
eb20cf9
mechanistic spine: influence prey selection only
ruiying-ocean Jul 1, 2023
355e23c
update foramecogem user-config
ruiying-ocean Jul 1, 2023
a992e25
update foramecogem uerconfig
ruiying-ocean Jul 2, 2023
71df912
migrate forcings files
ruiying-ocean Jul 2, 2023
dbe45dd
delete foramecogem old names
ruiying-ocean Jul 2, 2023
babb589
correct parameter name foram_spine_scale
ruiying-ocean Jul 2, 2023
b1b4a88
update readme running command
ruiying-ocean Jul 2, 2023
e0c7184
add historical experiment saving data
ruiying-ocean Jul 2, 2023
554e980
add future saving timeslice dataevery 10 years
ruiying-ocean Jul 2, 2023
a0ee77e
balance the foram biomass
ruiying-ocean Jul 2, 2023
86524d3
delete unpublished code RY
ruiying-ocean Jul 6, 2023
5578ca0
delete unpublished definition in ecogem_lib
ruiying-ocean Jul 6, 2023
5d89271
delete definition in definition.xml
ruiying-ocean Jul 6, 2023
7d11dd7
remove MLD setting in foramecogem
ruiying-ocean Jul 8, 2023
fcf5308
Add back MLD but set fault to ctrl_diagmld
ruiying-ocean Jul 8, 2023
5b5ccc5
update readme.md
ruiying-ocean Sep 21, 2023
f249ac2
Merge branch 'derpycode:master' into DEV_Foram
ruiying-ocean Sep 21, 2023
a36319c
Merge branch 'master' into DEV_Foram
ruiying-ocean Sep 21, 2023
bfcd051
Fix: update Pliocene user-configs in the readme
ruiying-ocean Oct 9, 2023
ca2c352
feat: add export netcdf2d in ecogem
ruiying-ocean Oct 23, 2023
ea930db
Merge branch 'derpycode:master' into DEV_Foram
ruiying-ocean Oct 23, 2023
f23da60
fix: remove some unused variable definition
ruiying-ocean Oct 23, 2023
e0e297e
fix: a typo of variable name
ruiying-ocean Oct 23, 2023
9586447
fix: another typo of variable name
ruiying-ocean Oct 23, 2023
b94a52a
fix: Add timeslice arrays in ecogem.data
ruiying-ocean Oct 23, 2023
a317282
fix: add int_xx_timeslice in diag_ecogem_timeslice
ruiying-ocean Oct 23, 2023
b813580
fix: correct the variable name
ruiying-ocean Oct 23, 2023
6addd8c
fix: typo! prespir_timeslice
ruiying-ocean Oct 23, 2023
a2b53c4
fix: segment fault (not allocate before assigning values)
ruiying-ocean Oct 23, 2023
9ca4f96
fix: avoid writing all nutrient tracers in loss terms
ruiying-ocean Oct 23, 2023
1f026ff
fix: netcdf exported variable's string format
ruiying-ocean Oct 23, 2023
989092f
fix: format the output string
ruiying-ocean Oct 23, 2023
e622927
fix: comma forgot
ruiying-ocean Oct 23, 2023
5348208
fix: format string properly
ruiying-ocean Oct 23, 2023
a91aaa6
format string finally (maybe)
ruiying-ocean Oct 23, 2023
788e5a9
format respiration
ruiying-ocean Oct 23, 2023
d53a5b7
fix: update string of new exported variable
ruiying-ocean Oct 23, 2023
8e1299f
fix: mort_loss and respir_loss should be carbon biomass
ruiying-ocean Oct 24, 2023
4d47c80
add a user-config of LGM seasonal data
ruiying-ocean Nov 23, 2023
08c9fea
Merge branch 'master' into DEV_Foram
ruiying-ocean Dec 5, 2023
bc55505
Add comment in default foram PFT
ruiying-ocean Dec 5, 2023
52bb789
remove all bleach/acidification related parameters
ruiying-ocean Dec 5, 2023
fe565dc
Add 3D2P2E4Z4F.eco based on new EcoGENIE (ANB et al. 2023)
ruiying-ocean Dec 5, 2023
cab72d6
Add ForamEcoGEM 2.1 test files
ruiying-ocean Dec 5, 2023
e254129
Merge branch 'derpycode:master' into DEV_Foram
ruiying-ocean Feb 3, 2024
d3da40f
remove the awkward foramecogem2.1
ruiying-ocean Feb 5, 2024
5ebe313
remove the foram+Hol config
ruiying-ocean Feb 5, 2024
e17b6b0
Merge branch 'derpycode:master' into DEV_Foram
ruiying-ocean Feb 12, 2024
a8db541
add a more comparable steady-state future run
ruiying-ocean Apr 1, 2024
f089726
update forcing for 5000.4degC
ruiying-ocean Apr 1, 2024
5956cd6
no CO2 change after 2300
ruiying-ocean Apr 1, 2024
2c2247d
apply the forcing
ruiying-ocean Apr 1, 2024
b3d1682
fix a typo
ruiying-ocean Apr 1, 2024
c4e2e89
add GIteiiva to the fname_topo list to export opsia
ruiying-ocean Apr 28, 2024
77e0aa0
save more historical timeslice data
ruiying-ocean May 1, 2024
fef7565
save more timeslice in future runs
ruiying-ocean May 1, 2024
05792d4
remove pliocene configs
ruiying-ocean May 1, 2024
08607a7
remove 5000.4deg (not necessary)
ruiying-ocean May 6, 2024
13993de
complete list of forcing/user-configs as the revised paper
ruiying-ocean May 29, 2024
4cab453
add update_flux in the revised manuscript
ruiying-ocean Jul 5, 2024
f1f12a0
Merge branch 'master' into DEV_Foram
ruiying-ocean Aug 23, 2024
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290 changes: 290 additions & 0 deletions genie-biogem/data/input/save_sig_historical2022.dat
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