Issues · dieterich-lab/circtools · GitHub

This repository was archived by the owner on Jan 26, 2026. It is now read-only.

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Run primex alone - input format

#98

· Zgautier opened

on Jan 23, 2026

remapping input should be Unmapped.out.mate or mate of PE?

#92

· genebial opened

on Nov 28, 2021

linear primers in circtools primex for each circRNA candidate

#84

· daaaaande opened

on Oct 2, 2019

·

Version 1.2.0.0

Python2 and 3 support not feasible on HPC environments

#82

· Psy-Fer opened

on Aug 22, 2019

Different results for circtest from circtools or from R

#69

· idotu opened

on Nov 13, 2018

Add per exon p-value and log2 fold changes to exon Excel output

#48

· tjakobi opened

on Dec 14, 2017

·

Version 1.2.0.0

Investigate what 'unknown breakpoint' events are

#42

· tjakobi opened

on Nov 2, 2017

·

Version 1.2.0.0

Normalize #circRNA isoforms in visualization plots

#41

· tjakobi opened

on Nov 2, 2017

·

Version 1.2.0.0

Module to analyse conservation of circRNAs across species

#36

· tjakobi opened

on Aug 31, 2017

·

Version 1.2.0.0

Module to design siRNAs

#24

· tjakobi opened

on Jun 30, 2017

·

Version 1.2.0.0

Remove (py)bedtools dependency

#16

· tjakobi opened

on Jun 18, 2017

·

Version 1.2.0.0

Add support for zipped input files

#15

· tjakobi opened

on Jun 17, 2017

·

Version 1.2.0.0