Name	Name	Last commit message	Last commit date
Latest commit History 153 Commits
TestImages	TestImages
aro-tutorial	aro-tutorial
mpiv_toolbox	mpiv_toolbox
saveastiff_2.2	saveastiff_2.2
.gitignore	.gitignore
Aro_parametersTEMPLATE.m	Aro_parametersTEMPLATE.m
LICENSE	LICENSE
README.md	README.md
RFparameters.m	RFparameters.m
UpdateLog.txt	UpdateLog.txt
UpdateLog_v2.5.txt	UpdateLog_v2.5.txt
addStatsToTrainingSet.m	addStatsToTrainingSet.m
addStatsToWormGaussian.m	addStatsToWormGaussian.m
add_chromosome_count_to_data_file.m	add_chromosome_count_to_data_file.m
analysis_after_masks_pace.m	analysis_after_masks_pace.m
analysis_after_masks_pace.pbs	analysis_after_masks_pace.pbs
aro-tutorial.pdf	aro-tutorial.pdf
autoGaussianSurf.m	autoGaussianSurf.m
auto_mask.m	auto_mask.m
auto_mask_directory.m	auto_mask_directory.m
auto_trim.m	auto_trim.m
auto_trim_directory.m	auto_trim_directory.m
auto_trim_mask_directory.m	auto_trim_mask_directory.m
automask_pace.m	automask_pace.m
automask_pace.pbs	automask_pace.pbs
calculateDeltaStats.m	calculateDeltaStats.m
calculateFISHStatistics.m	calculateFISHStatistics.m
calculateRandStats.m	calculateRandStats.m
calibrateCurve.fig	calibrateCurve.fig
calibrateCurve.m	calibrateCurve.m
calibrateProbabilities.m	calibrateProbabilities.m
classifySpots.m	classifySpots.m
classifySpotsOnDirectory.m	classifySpotsOnDirectory.m
colToX.m	colToX.m
collectDigits.m	collectDigits.m
collect_stats.m	collect_stats.m
convertWormFitFile1p4To2p0.m	convertWormFitFile1p4To2p0.m
convertWormFitFilesWrapper.m	convertWormFitFilesWrapper.m
correctBleachAndFilter.m	correctBleachAndFilter.m
count_chromosomes.m	count_chromosomes.m
count_chromosomes_directory.m	count_chromosomes_directory.m
createSegImages.m	createSegImages.m
createSegmenttrans.m	createSegmenttrans.m
createSpotTrainingSet.m	createSpotTrainingSet.m
doEvalFISHStacksForAll.m	doEvalFISHStacksForAll.m
evalFISHStacks.m	evalFISHStacks.m
findembryosPreManual.m	findembryosPreManual.m
full_run_aro.m	full_run_aro.m
full_run_aro.pbs	full_run_aro.pbs
gfit2.m	gfit2.m
histseries_forSpotTreeProbs.m	histseries_forSpotTreeProbs.m
identifySpots.fig	identifySpots.fig
identifySpots.m	identifySpots.m
imdownsample.m	imdownsample.m
imscale.m	imscale.m
imupsample.m	imupsample.m
laplaceFISH.m	laplaceFISH.m
makeSpotCountInterval.m	makeSpotCountInterval.m
medianfilter.m	medianfilter.m
modaldlg.fig	modaldlg.fig
modaldlg.m	modaldlg.m
morphFilterSpotImage3D.m	morphFilterSpotImage3D.m
mygaussfit.m	mygaussfit.m
natsort.m	natsort.m
natsortfiles.m	natsortfiles.m
newFISHfilter.m	newFISHfilter.m
parametersForSigmoidProbabilityCalibrationCurve.mat	parametersForSigmoidProbabilityCalibrationCurve.mat
parseStackNames.m	parseStackNames.m
produce_mask_thumbnails.m	produce_mask_thumbnails.m
readmm.m	readmm.m
reviewFISHClassification.fig	reviewFISHClassification.fig
reviewFISHClassification.m	reviewFISHClassification.m
rowToY.m	rowToY.m
run_analysis.m	run_analysis.m
sc.m	sc.m
scale.m	scale.m
segment_directory.m	segment_directory.m
show_mask_preview.fig	show_mask_preview.fig
show_mask_preview.m	show_mask_preview.m
spotStatsDataAligning.m	spotStatsDataAligning.m
spotStatsDataAligning2.m	spotStatsDataAligning2.m
trainRFClassifier.m	trainRFClassifier.m
translateToNewCoordinates.m	translateToNewCoordinates.m
updateSpotStats.m	updateSpotStats.m
updateTrainingSet.m	updateTrainingSet.m
visualizeTrainingSet.m	visualizeTrainingSet.m
visualizeWGF.m	visualizeWGF.m
xToCol.m	xToCol.m
yToRow.m	yToRow.m

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153 Commits

Aro_parametersTEMPLATE.m

LICENSE

README.md