repo: move mypy configs to pyproject.toml#3780
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These changes preserve existing mypy config. We will want to unify the docs and main project later. The existing mypy_path arg was removed because it was currently unused (the explicit .ini overrides it)
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LGTM! bumped ci to Python 3.11 so we have uniform repr. of notebooks
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what the title says.
Partially resolves #3346