Skip to content

Commit b4a6fb2

Browse files
authored
updated README for dnaVerification & polish method
1 parent 8887160 commit b4a6fb2

1 file changed

Lines changed: 14 additions & 2 deletions

File tree

README.md

Lines changed: 14 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -60,11 +60,23 @@ client.codonJuggle(
6060

6161
```
6262
client.dnaVarification(
63-
"./data/dna.fasta", // input sequence
64-
"./data/constraints.scl", // synthesis constraints
63+
"./data/dna.fasta", // a FASTA file containing the input sequence
64+
Vendor.GEN9 // vendor
6565
"./data/patterns.fasta"); // sequence patterns
6666
```
6767

68+
* polish
69+
70+
```
71+
client.polish(
72+
"./data/dna.fasta", // a FASTA file containing input sequence
73+
true, // encoding sequences support sequence feature annotations
74+
Vendor.JGI, // vendor
75+
Strategy.Balanced2Random, // codon selection strategy
76+
FileFormat.SBOL, // the desired output format
77+
"Saccharomyces cerevisiae"); // predefined host
78+
```
79+
6880
## Examples
6981

7082
An example of invoking every supported method is provided in the [DemoClient](https://github.com/eoberortner/BOOST-REST-Client/blob/master/src/test/java/gov/doe/jgi/boost/client/DemoClient.java)

0 commit comments

Comments
 (0)