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Capturing microbial presence from human blood RNAseq data

This repository contains scripts to reproduce the results presented in "Whole blood transcriptomics analysis of Indonesians reveals translocated and pathogenic microbiota in blood".

(mirrored from HGE Lab's gitlab)

Citation

Bobowik, K., Fachrul, M., Darusallam, C. C., Kusuma, P., Sudoyo, H., Febinia, C. A., Malik, S. G., Wells, C. A., & Romero, I. G. (2025). Whole blood transcriptomics analysis of Indonesians reveals translocated and pathogenic microbiota in blood. PLOS ONE, 20(7), e0328788. https://doi.org/10.1371/journal.pone.0328788

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Capturing microbial presence from human blood RNAseq data

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