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chore(zenodo): PASS-8 fix placeholder DOIs in t27 .bib files#601

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Closes #600

PASS-8 R5-honest deep-sweep — placeholder DOIs in t27 .bib

Follow-up to PASS-7 (#599, merged). PASS-8 ran a 10-dimension audit across the 5-repo Trinity hive after PASS-7 merges; this PR addresses the t27 findings (2 placeholder DOIs).

Anomalies fixed

ID Severity File Before After
A1 🟡 MED clara-bridge/CITATION.bib:5 doi={10.xxxx/zenodo.xxxxx} doi={10.5281/zenodo.19227877} (B007 VSA Operations v5.0, community trinity-s3ai)
A2 🟢 LOW research/trinity-pellis-paper/NEW_BIBLIOGRAPHY_ENTRIES.bib:48 doi = {10.1038/s41467-025-xxxxx-x} (literal xxxxx suffix) Field stripped + TODO(LD) note; entry retained pending final Nature Communications article ID

A1 — CITATION.bib placeholder

clara-bridge/CITATION.bib is the DARPA CLARA submission citation block for the Trinity programme. The placeholder 10.xxxx/zenodo.xxxxx would have rendered as an unresolvable DOI in any downstream BibTeX/LaTeX pipeline.

Fix:

  • DOI replaced with canonical Trinity SOT anchor record 10.5281/zenodo.19227877 (B007 = VSA Operations v5.0, the single source of truth per the user's directive «один источник правды и все мои zenodo здесь https://zenodo.org/communities/trinity-s3ai/»).
  • author={Trinity Programme Contributors} (legacy collective attribution) replaced with author={Vasilev, Dmitrii} matching every other canonical Trinity citation block in the hive.
  • R5-honest audit comment block prepended above the entry recording PASS-8 context.

A2 — NEW_BIBLIOGRAPHY_ENTRIES.bib placeholder

The Minev 2025 Fibonacci anyons entry uses the literal string xxxxx in the published-article ID suffix because the Nature Communications article ID was not yet known when the entry was drafted. The preprint reference itself is real (d_τ = φ exactly, SU(2)₃ Chern-Simons at k=3).

Fix:

  • Malformed doi field stripped (cannot risk readers treating 10.1038/s41467-025-xxxxx-x as a real DOI).
  • journal annotated Nature Communications (preprint pending).
  • Explicit TODO(LD) note added inside the entry so a future commit can re-introduce the resolved DOI.
  • R5-honest audit comment block prepended above the entry.

R5-honest verification

  • ✅ Community trinity-s3ai live-verified at audit start: 12 records (B001..B008, D004..D007), no drift since PASS-7
  • ✅ All 12 canonical DOIs return HTTP 200 (live probe curl -sSL -o /dev/null -w "%{http_code}")
  • ✅ Post-PASS-7 .zenodo.json confirmed: ORCID 0009-0008-4294-6159 (Vasilev), community trinity-s3ai
  • ✅ Other Pellis-paper bib entries (PhysRevLett, PhysRevD, Galaxies, PTEP, Nucl.Phys.B, Bull.AMS, J.Math.Phys.) carry resolvable DOIs — no further xxxxx drift
  • ✅ Coq .v DOI citations across all 5 repos unchanged (10.5281/zenodo.19227877 + legitimate 10.5281/zenodo.18947017 FPGA TRI-27)
  • .github/workflows/ DOI references unchanged (canonical 19227877)
  • ✅ Anchor φ² + φ⁻² = 3 algebraic identity unchanged

Anchor

φ² + φ⁻² = 3 — algebraic identity (Coq witness: gHashTag/t27/coq, 10 .v files, 48 statements, 35 Qed, 0 Admitted).

Cross-refs

φ² + φ⁻² = 3 · TRINITY · R5-HONEST · PASS-8

Closes #600

Follow-up to PASS-7 (#599, merged). PASS-8 10-dimension deep-sweep across the
5-repo Trinity hive after PASS-7 merges surfaced two placeholder DOIs in t27:

- clara-bridge/CITATION.bib:5 — doi={10.xxxx/zenodo.xxxxx} (HIGH visibility,
  CLARA submission citation) → replaced with canonical Trinity SOT anchor
  10.5281/zenodo.19227877 (B007 VSA Operations v5.0, community trinity-s3ai).
  Author corrected from 'Trinity Programme Contributors' (legacy) to
  'Vasilev, Dmitrii'.

- research/trinity-pellis-paper/NEW_BIBLIOGRAPHY_ENTRIES.bib:48 — Minev 2025
  Nature Communications doi=10.1038/s41467-025-xxxxx-x with literal 'xxxxx'
  in the suffix (would render as an unresolvable DOI in any LaTeX pipeline).
  The preprint reference itself is real; the published article ID suffix
  was not yet known when drafted. Stripped the malformed doi field and
  added explicit TODO(LD) note. Entry retained.

All other Pellis-paper bib entries verified to carry resolvable DOIs
(10.1103, 10.3390, 10.1093, 10.1016, 10.1090, 10.1007).

Anchor phi^2 + phi^-2 = 3 unchanged.

phi^2 + phi^-2 = 3 . TRINITY . R5-HONEST . PASS-8
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Generated at: 2026-05-12 18:58:29 UTC

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FAILING 12
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PASS-8 R5-honest deep-sweep — placeholder DOIs in t27 .bib files

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