This is the repository for hammerlab.org/melanoma-reanalysis.
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- Online Data File 1. Clinical patient data
- Online Data File 2. HLA Types
- Online Data File 3. SNVs with predicted neoepitopes
- Online Data File 4. Indels with predicted neoepitopes
- Online Data File 5. Gene quantification (Cufflinks) data
- Online Data File 6. Allele specific expression read counts
- Online Data File 7. IEDB T cell epitope data (as of 6/10/2015)
- Online Data File 8. Pathogen Homology AUCs via Topeology (MSKCC)
- Online Data File 9. Pathogen Homology AUCs via Topeology (DFCI)
- Online Data File 10. Tetrapeptide Signature AUCs
- Online Data File 11. GSEA results (zipped)
- Website 1. GSEA results