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figure size override
Figures for frequency-picking
1) violin plot uses colored spots instead of white 2) Unfinished attempt to include log minor ticks 3) New plots showing that the phase error (privileged) is the most important thing 4) paper style graphs for varying number of frequencies measured 5) simulated_experiment now catches issues where the SVD does not converge.
also go all the way across using axvline and axhline instead of vlines and hlines
The scaling part is not working the way I think it is supposed to yet. But can still not scale the residuals in all functions, so we can still take data the same way as before if needed.
…ypes Currently, the run time is far too long. I believe something is wrong with the polar fitting because the error obtained is in the thousands. I'm not sure why the curve fitting isn't working now when it has in the past.
Not yet good to run 100 systems but almost there.
I have edited the code to use timeit.timeit for timing the three functions called multiple_fit_amp_phase, multiple_fit_X_Y, and get_parameters_NetMAP. I have begun to carry out that testing as well.
Added detailed documentation for the `res_freq_numeric()` function, including its parameters, logic flow, and usage example.
Added detailed documentation for the NetMAP Z-Matrix, including function descriptions, parameter mappings, and usage examples.
fix markdown
Added detailed documentation for the `simulated_experiment()` function, including its purpose, parameters, logic flow, return values, and supporting helper functions.
Expanded usage note to include details on optimal experimental conditions and reference to publication.
Added detailed documentation about NetMAP, its features, core components, scientific context, dependencies, and basic workflow.
Updated project title in README and removed extra text.
Updated README to add notebook documentation
fix acronym: Network Mapping and Analysis of Parameters
Added attribution to the Horowitz Lab at Hamilton College.
Added a detailed mathematical framework section for NetMAP, outlining the equations of motion, frequency domain transition, separation of components, Z-matrix construction, and SVD scaling.
Updated equations and matrix representation in README.
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