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krglkvrmn
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May 22, 2022
| :param seq: FASTA sequence | ||
| ''' | ||
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| counts_dict = dict(Counter(seq)) |
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| counts_dict = dict(Counter(seq)) | |
| counts_dict = Counter(seq) |
| for process in processes: | ||
| process.join() | ||
| processes = [] | ||
| processes.append(multiprocessing.Process(target=self.count_letters, args=(record.id, record.seq))) |
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По 1 последовательности на процесс это, конечно, перебор. Из-за этого работает медленнее. Логичнее было бы разделить все данные на столько частей, сколько всего процессов и каждому дать этот кусок. Создание процесса на каждую последовательность слишком накладно
| counts_dict = dict(Counter(seq)) | ||
| counts_list = [k + '=' + str(v) for k, v in counts_dict.items()] | ||
| counts_str = ', '.join(counts_list) | ||
| print(f'{id_}:', counts_str) |
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Лучше производить печать вне процесса
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