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use ozx for n4 Lint and test workflow #506: Commit a5f22b3 pushed by akhanf
20s copilot/add-group-level-otsu-threshold
copilot/add-group-level-otsu-threshold
20s
Add batch histogram computation, aggregation, Otsu threshold, and QC … Lint and test workflow #505: Commit 47f1c2b pushed by Copilot AI
Action required copilot/add-histogram-calculation-rules
copilot/add-histogram-calculation-rules
Action required
Running Copilot cloud agent Copilot cloud agent #71: by Copilot AI
12m 48s copilot/add-histogram-calculation-rules
copilot/add-histogram-calculation-rules
12m 48s
Address code review: named constants, specific exception handling, in… Lint and test workflow #504: Commit 5ed94d0 pushed by Copilot AI
Action required copilot/add-per-subject-histogram-functionality
copilot/add-per-subject-histogram-functionality
Action required
Add per-subject bias-corrected intensity histogram QC rule Lint and test workflow #503: Commit f1637fc pushed by Copilot AI
Action required copilot/add-per-subject-histogram-functionality
copilot/add-per-subject-histogram-functionality
Action required
Running Copilot cloud agent Copilot cloud agent #70: by Copilot AI
18m 43s copilot/add-per-subject-histogram-functionality
copilot/add-per-subject-histogram-functionality
18m 43s
Fix exception handling to use except Exception as e with logging Lint and test workflow #502: Commit cdcdf31 pushed by Copilot AI
21s copilot/add-group-level-otsu-threshold
copilot/add-group-level-otsu-threshold
21s
Add group-level otsu thresholding (all_group_otsu target, group_otsu … Lint and test workflow #501: Commit 012c1ee pushed by Copilot AI
Action required copilot/add-group-level-otsu-threshold
copilot/add-group-level-otsu-threshold
Action required
Running Copilot cloud agent Copilot cloud agent #69: by Copilot AI
13m 53s copilot/add-group-level-otsu-threshold
copilot/add-group-level-otsu-threshold
13m 53s
Merge pull request #153 from khanlab/fix-nondeterministic-params Lint and test workflow #500: Commit 934adc6 pushed by akhanf
2m 35s main
main
2m 35s
fix for stains list Lint and test workflow #499: Commit 692601e pushed by akhanf
2m 50s fix-nondeterministic-params
fix-nondeterministic-params
2m 50s
Merge pull request #151 from khanlab/copilot/remove-k-wildcard-atropo… Lint and test workflow #498: Commit 59204ba pushed by akhanf
1m 39s main
main
1m 39s
update conda env to allow python script Lint and test workflow #497: Commit 39c6ae6 pushed by akhanf
1m 33s copilot/remove-k-wildcard-atropos-seg
copilot/remove-k-wildcard-atropos-seg
1m 33s
Running Copilot coding agent Copilot cloud agent #68: by Copilot AI
10m 11s copilot/remove-k-wildcard-atropos-seg
copilot/remove-k-wildcard-atropos-seg
10m 11s
Add --direct_biasfield CLI option and alternate direct computation ru… Lint and test workflow #494: Commit 72adf15 pushed by Copilot AI
Action required copilot/add-direct-computation-segmentation
copilot/add-direct-computation-segmentation
Action required
Running Copilot coding agent Copilot cloud agent #67: by Copilot AI
9m 21s copilot/add-direct-computation-segmentation
copilot/add-direct-computation-segmentation
9m 21s
Add --via-template option for multi-step template registration Lint and test workflow #493: Commit 485ec2d pushed by Copilot AI
Action required copilot/add-feature-mapping-templates
copilot/add-feature-mapping-templates
Action required
Running Copilot coding agent Copilot cloud agent #66: by Copilot AI
15m 9s copilot/add-feature-mapping-templates
copilot/add-feature-mapping-templates
15m 9s
Address code review: move imports to top of Snakefile, rename private… Lint and test workflow #492: Commit 27d929a pushed by Copilot AI
Action required copilot/refactor-group-analysis-cli
copilot/refactor-group-analysis-cli
Action required
Address code review: improve strata naming, add file existence check,… Lint and test workflow #491: Commit 28f6bca pushed by Copilot AI
Action required copilot/refactor-group-analysis-cli
copilot/refactor-group-analysis-cli
Action required
Refactor group analysis CLI: replace contrast_column/values with mode… Lint and test workflow #490: Commit 3e4a0f9 pushed by Copilot AI
Action required copilot/refactor-group-analysis-cli
copilot/refactor-group-analysis-cli
Action required
Running Copilot coding agent Copilot cloud agent #65: by Copilot AI
18m 38s copilot/refactor-group-analysis-cli
copilot/refactor-group-analysis-cli
18m 38s
Merge pull request #146 from khanlab/copilot/update-multiotsu-options Lint and test workflow #489: Commit 8e54ac5 pushed by akhanf
1m 53s main
main
1m 53s
fmt Lint and test workflow #488: Commit 8d4bb58 pushed by akhanf
1m 50s copilot/update-multiotsu-options
copilot/update-multiotsu-options
1m 50s
Merge pull request #145 from khanlab/copilot/add-qc-rules-animated-gifs Lint and test workflow #487: Commit e18facc pushed by akhanf
1m 36s main
main
1m 36s