This repository reproduces the results from the ICePop paper (link).
For installation instructions and a tutorial for the ICePop package, see: https://github.com/krishnanlab/icepop_public
We assume the following directory structure when running the analysis:
data/
results/
src/
notebook/
run/ (working directory for running scripts)
All data required to reproduce the analyses are available on Zenodo.
We assume all data have been downloaded and extracted under data/.
The magmaz directory need to be placed under data/TM_FACS/.
- notebook/: Jupyter notebooks used to generate figures and tables in the paper
- src/: Scripts for reproducing the results
- paper/: Output figures and plots included in the manuscript
- Detailed descriptions of scripts are available in src/README.md
- Notebook-specific explanations are available in notebook/README.md