Regenerate derived files

src/valuesets/enums/__init__.py

@@ -70,6 +70,7 @@
 from .bioprocessing.scale_up import ProcessScaleEnum, BioreactorTypeEnum, FermentationModeEnum, OxygenationStrategyEnum, AgitationTypeEnum, DownstreamProcessEnum, FeedstockTypeEnum, ProductTypeEnum, SterilizationMethodEnum
 
 # Business domain
+from .business.currencies import CurrencyCode
 from .business.human_resources import EmploymentTypeEnum, JobLevelEnum, HRFunctionEnum, CompensationTypeEnum, PerformanceRatingEnum, RecruitmentSourceEnum, TrainingTypeEnum, EmployeeStatusEnum, WorkArrangementEnum, BenefitsCategoryEnum
 from .business.industry_classifications import NAICSSectorEnum, EconomicSectorEnum, BusinessActivityTypeEnum, IndustryMaturityEnum, MarketStructureEnum, IndustryRegulationLevelEnum
 from .business.management_operations import ManagementMethodologyEnum, StrategicFrameworkEnum, OperationalModelEnum, PerformanceMeasurementEnum, DecisionMakingStyleEnum, LeadershipStyleEnum, BusinessProcessTypeEnum
@@ -79,6 +80,7 @@
 
 # Chemistry domain
 from .chemistry.chemical_entities import SubatomicParticleEnum, BondTypeEnum, PeriodicTableBlockEnum, ElementFamilyEnum, ElementMetallicClassificationEnum, HardOrSoftEnum, BronstedAcidBaseRoleEnum, LewisAcidBaseRoleEnum, OxidationStateEnum, ChiralityEnum, NanostructureMorphologyEnum
+from .chemistry.identifiers import ChemicalIdentifierScheme
 from .chemistry.reaction_directionality import RelativeTimeEnum, PresenceEnum, ReactionDirectionality
 from .chemistry.reactions import ReactionTypeEnum, ReactionMechanismEnum, CatalystTypeEnum, ReactionConditionEnum, ReactionRateOrderEnum, EnzymeClassEnum, SolventClassEnum, ThermodynamicParameterEnum
 
@@ -221,6 +223,13 @@
 from .preservation.events import PreservationEventType, PreservationEventOutcome
 from .preservation.fixity import CryptographicHashFunction
 
+# Process_Engineering domain
+from .process_engineering.process_industries import ProcessIndustryCategory, ProcessOperationMode
+from .process_engineering.process_modeling import DesignSimulationMethod, FlowsheetSolutionApproach, ProcessSimulator
+from .process_engineering.process_streams import ProcessStreamRole, ProcessStreamPhase, UtilityType
+from .process_engineering.thermodynamics import EquationOfStateModel, ActivityCoefficientModel, ThermodynamicPropertyPackage, MixingRuleModel, PoyntingCorrectionMethod
+from .process_engineering.unit_operations import UnitOperationType, ProcessEquipmentType
+
 # Publishing domain
 from .publishing.arxiv_categories import ArxivCategory
 from .publishing.osti_record import OstiWorkflowStatus, OstiAccessLimitation, OstiCollectionType, OstiSensitivityFlag, OstiOrganizationIdentifierType, OstiProductType, OstiOrganizationType, OstiPersonType, OstiContributorType, OstiRelatedIdentifierType, OstiRelationType, OstiIdentifierType, OstiGeolocationType, OstiMediaLocationType
@@ -239,7 +248,7 @@
 from .time.temporal import DayOfWeek, Month, Quarter, Season, TimePeriod, TimeOfDay, BusinessTimeFrame, GeologicalEra, HistoricalPeriod
 
 # Units domain
-from .units.measurements import LengthUnitEnum, MassUnitEnum, VolumeUnitEnum, TemperatureUnitEnum, TimeUnitEnum, PressureUnitEnum, ConcentrationUnitEnum, FrequencyUnitEnum, AngleUnitEnum, DataSizeUnitEnum
+from .units.measurements import LengthUnitEnum, MassUnitEnum, VolumeUnitEnum, TemperatureUnitEnum, TimeUnitEnum, PressureUnitEnum, ConcentrationUnitEnum, FrequencyUnitEnum, AngleUnitEnum, DataSizeUnitEnum, MassFlowRateUnitEnum, MolarFlowRateUnitEnum, VolumetricFlowRateUnitEnum
 from .units.quantity_kinds import QuantityKindEnum
 
 # Visual domain
@@ -250,6 +259,7 @@
     "AcademicDegree",
     "AccessRights",
     "AcousticRadiationTypeEnum",
+    "ActivityCoefficientModel",
     "AdditiveManufacturingEnum",
     "AgeGroupEnum",
     "AgitationTypeEnum",
@@ -334,6 +344,7 @@
     "CellPolarity",
     "CellProliferationState",
     "CellularityEnum",
+    "ChemicalIdentifierScheme",
     "ChipFabricationNodeType",
     "ChiralityEnum",
     "ChromatographyType",
@@ -375,6 +386,7 @@
     "CrystalSystemEnum",
     "CrystallizationMethod",
     "CurrencyChemical",
+    "CurrencyCode",
     "CurrencyCodeISO4217Enum",
     "DNABaseEnum",
     "DNABaseExtendedEnum",
@@ -402,6 +414,7 @@
     "DefectClassificationEnum",
     "DefenseInDepthLevelEnum",
     "DerivatizationMethod",
+    "DesignSimulationMethod",
     "DetectionModeEnum",
     "Detector",
     "DetectorType",
@@ -438,6 +451,7 @@
     "EnvironmentalImpact",
     "EnzymeClassEnum",
     "EnzymologyAssayEnum",
+    "EquationOfStateModel",
     "EthnicityOMB1997Enum",
     "ExecutionModeEnum",
     "ExperimentalDesignMethodType",
@@ -469,6 +483,7 @@
     "FireSafetyColorEnum",
     "FissileIsotopeEnum",
     "FlowerColorEnum",
+    "FlowsheetSolutionApproach",
     "FoodColoringEnum",
     "FossilFuelTypeEnum",
     "FraudDetectionEnum",
@@ -597,6 +612,7 @@
     "MaritimeSignalColorEnum",
     "MarketStructureEnum",
     "MassErrorUnit",
+    "MassFlowRateUnitEnum",
     "MassSpectrometerFileFormat",
     "MassSpectrometerVendor",
     "MassSpectrometryAssayEnum",
@@ -625,8 +641,10 @@
     "MiningPhase",
     "MiningType",
     "MitoticPhase",
+    "MixingRuleModel",
     "ModeOfInheritance",
     "ModelSystemTypeEnum",
+    "MolarFlowRateUnitEnum",
     "Month",
     "MouseDevelopmentalStage",
     "MousePostnatalAgeGroupEnum",
@@ -710,6 +728,7 @@
     "PolymerTypeEnum",
     "PowerPlantStatusEnum",
     "PowerUnit",
+    "PoyntingCorrectionMethod",
     "PredictionOutcomeType",
     "PresenceEnum",
     "PreservationEventOutcome",
@@ -718,9 +737,15 @@
     "PreservationLevelValue",
     "PressureUnitEnum",
     "PriorityLevelEnum",
+    "ProcessEquipmentType",
     "ProcessImprovementApproachEnum",
+    "ProcessIndustryCategory",
+    "ProcessOperationMode",
     "ProcessPerformanceMetric",
     "ProcessScaleEnum",
+    "ProcessSimulator",
+    "ProcessStreamPhase",
+    "ProcessStreamRole",
     "ProcessingStatus",
     "ProcurementTypeEnum",
     "ProductTypeEnum",
@@ -865,6 +890,7 @@
     "ThermalCyclerTypeEnum",
     "ThermalCyclingStepEnum",
     "ThermodynamicParameterEnum",
+    "ThermodynamicPropertyPackage",
     "TimeOfDay",
     "TimePeriod",
     "TimeUnitEnum",
@@ -889,8 +915,10 @@
     "USStateCodeEnum",
     "UnconventionalMineralResourceType",
     "UniProtSpeciesCode",
+    "UnitOperationType",
     "UpdateFrequency",
     "UraniumEnrichmentLevelEnum",
+    "UtilityType",
     "VaccinationPeriodicityEnum",
     "VaccinationStatusEnum",
     "VaccineCategoryEnum",
@@ -906,6 +934,7 @@
     "VitalStatusEnum",
     "VitrificationMethod",
     "VolumeUnitEnum",
+    "VolumetricFlowRateUnitEnum",
     "WasteDisposalMethodEnum",
     "WasteFacilityTypeEnum",
     "WasteHalfLifeCategoryEnum",

src/valuesets/enums/bioprocessing/scale_up.py

@@ -139,6 +139,16 @@ class DownstreamProcessEnum(RichEnum):
     DISTILLATION = "DISTILLATION"
     DRYING = "DRYING"
     HOMOGENIZATION = "HOMOGENIZATION"
+    CLARIFICATION = "CLARIFICATION"
+    FLOCCULATION = "FLOCCULATION"
+    ULTRAFILTRATION = "ULTRAFILTRATION"
+    DIAFILTRATION = "DIAFILTRATION"
+    TANGENTIAL_FLOW_FILTRATION = "TANGENTIAL_FLOW_FILTRATION"
+    BUFFER_EXCHANGE = "BUFFER_EXCHANGE"
+    ADSORPTION = "ADSORPTION"
+    VIRAL_INACTIVATION = "VIRAL_INACTIVATION"
+    POLISHING = "POLISHING"
+    LYOPHILIZATION = "LYOPHILIZATION"
 
 # Set metadata after class creation
 DownstreamProcessEnum._metadata = {
@@ -151,6 +161,16 @@ class DownstreamProcessEnum(RichEnum):
     "DISTILLATION": {'description': 'Distillation', 'meaning': 'CHMO:0001534', 'annotations': {'principle': 'Boiling point difference'}},
     "DRYING": {'description': 'Drying operations', 'meaning': 'CHMO:0001551', 'annotations': {'types': 'Spray, freeze, vacuum'}},
     "HOMOGENIZATION": {'description': 'Cell disruption/homogenization', 'annotations': {'methods': 'High pressure, bead mill'}},
+    "CLARIFICATION": {'description': 'Removal of cells and debris to produce a clarified harvest', 'annotations': {'methods': 'Centrifugation, depth filtration'}},
+    "FLOCCULATION": {'description': 'Aggregation of cells and debris into flocs to aid clarification'},
+    "ULTRAFILTRATION": {'description': 'Membrane concentration retaining macromolecules such as proteins', 'meaning': 'CHMO:0001645', 'annotations': {'mwco': 'Typically 1-1000 kDa'}},
+    "DIAFILTRATION": {'description': 'Buffer exchange and desalting by ultrafiltration with continuous makeup'},
+    "TANGENTIAL_FLOW_FILTRATION": {'description': 'Crossflow membrane filtration used for concentration and diafiltration', 'annotations': {'aliases': 'TFF, crossflow filtration'}},
+    "BUFFER_EXCHANGE": {'description': 'Replacement of the buffer matrix of a product stream'},
+    "ADSORPTION": {'description': 'Capture of product or impurities onto a solid sorbent'},
+    "VIRAL_INACTIVATION": {'description': 'Treatment step that inactivates potential viral contaminants', 'annotations': {'methods': 'Low pH, solvent/detergent, heat'}},
+    "POLISHING": {'description': 'Final chromatographic or filtration steps to remove trace impurities'},
+    "LYOPHILIZATION": {'description': 'Freeze-drying to produce a stable solid product', 'meaning': 'CHMO:0001553', 'annotations': {'aliases': 'freeze drying'}},
 }
 
 class FeedstockTypeEnum(RichEnum):

src/valuesets/enums/business/currencies.py

@@ -0,0 +1,121 @@
+"""
+Currency Value Sets
+
+Value set of world currencies identified by their ISO 4217 three-letter alpha codes. Permissible value names are the ISO 4217 alpha-3 codes (an existing standard) rather than upper-snake-case. Covers monetary fields such as the PISCES Standard Flowsheet Format TEA_currency and per-mass price units. This is a curated set of actively circulating currencies and is extensible to the full ISO 4217 list.
+
+Generated from: business/currencies.yaml
+"""
+
+from __future__ import annotations
+
+from valuesets.generators.rich_enum import RichEnum
+
+class CurrencyCode(RichEnum):
+    """
+    World currencies by ISO 4217 alpha-3 code. The numeric_code, symbol, and minor_unit (number of decimal places) annotations record the corresponding ISO 4217 attributes.
+    """
+    # Enum members
+    USD = "USD"
+    EUR = "EUR"
+    JPY = "JPY"
+    GBP = "GBP"
+    CNY = "CNY"
+    AUD = "AUD"
+    CAD = "CAD"
+    CHF = "CHF"
+    HKD = "HKD"
+    SGD = "SGD"
+    SEK = "SEK"
+    NOK = "NOK"
+    DKK = "DKK"
+    NZD = "NZD"
+    KRW = "KRW"
+    INR = "INR"
+    BRL = "BRL"
+    ZAR = "ZAR"
+    RUB = "RUB"
+    MXN = "MXN"
+    TRY = "TRY"
+    PLN = "PLN"
+    THB = "THB"
+    IDR = "IDR"
+    MYR = "MYR"
+    PHP = "PHP"
+    AED = "AED"
+    SAR = "SAR"
+    ILS = "ILS"
+    CZK = "CZK"
+    HUF = "HUF"
+    RON = "RON"
+    UAH = "UAH"
+    CLP = "CLP"
+    COP = "COP"
+    ARS = "ARS"
+    EGP = "EGP"
+    NGN = "NGN"
+    KES = "KES"
+    PKR = "PKR"
+    BDT = "BDT"
+    VND = "VND"
+    TWD = "TWD"
+    KWD = "KWD"
+    BHD = "BHD"
+    OMR = "OMR"
+    QAR = "QAR"
+    ISK = "ISK"
+
+# Set metadata after class creation
+CurrencyCode._metadata = {
+    "USD": {'description': 'United States dollar', 'annotations': {'numeric_code': '840', 'symbol': '$', 'minor_unit': 2}},
+    "EUR": {'description': 'Euro', 'annotations': {'numeric_code': '978', 'symbol': '€', 'minor_unit': 2}},
+    "JPY": {'description': 'Japanese yen', 'annotations': {'numeric_code': '392', 'symbol': '¥', 'minor_unit': 0}},
+    "GBP": {'description': 'British pound sterling', 'annotations': {'numeric_code': '826', 'symbol': '£', 'minor_unit': 2}},
+    "CNY": {'description': 'Chinese yuan renminbi', 'annotations': {'numeric_code': '156', 'symbol': '¥', 'minor_unit': 2}},
+    "AUD": {'description': 'Australian dollar', 'annotations': {'numeric_code': '036', 'symbol': '$', 'minor_unit': 2}},
+    "CAD": {'description': 'Canadian dollar', 'annotations': {'numeric_code': '124', 'symbol': '$', 'minor_unit': 2}},
+    "CHF": {'description': 'Swiss franc', 'annotations': {'numeric_code': '756', 'symbol': 'Fr', 'minor_unit': 2}},
+    "HKD": {'description': 'Hong Kong dollar', 'annotations': {'numeric_code': '344', 'symbol': '$', 'minor_unit': 2}},
+    "SGD": {'description': 'Singapore dollar', 'annotations': {'numeric_code': '702', 'symbol': '$', 'minor_unit': 2}},
+    "SEK": {'description': 'Swedish krona', 'annotations': {'numeric_code': '752', 'symbol': 'kr', 'minor_unit': 2}},
+    "NOK": {'description': 'Norwegian krone', 'annotations': {'numeric_code': '578', 'symbol': 'kr', 'minor_unit': 2}},
+    "DKK": {'description': 'Danish krone', 'annotations': {'numeric_code': '208', 'symbol': 'kr', 'minor_unit': 2}},
+    "NZD": {'description': 'New Zealand dollar', 'annotations': {'numeric_code': '554', 'symbol': '$', 'minor_unit': 2}},
+    "KRW": {'description': 'South Korean won', 'annotations': {'numeric_code': '410', 'symbol': '₩', 'minor_unit': 0}},
+    "INR": {'description': 'Indian rupee', 'annotations': {'numeric_code': '356', 'symbol': '₹', 'minor_unit': 2}},
+    "BRL": {'description': 'Brazilian real', 'annotations': {'numeric_code': '986', 'symbol': 'R$', 'minor_unit': 2}},
+    "ZAR": {'description': 'South African rand', 'annotations': {'numeric_code': '710', 'symbol': 'R', 'minor_unit': 2}},
+    "RUB": {'description': 'Russian ruble', 'annotations': {'numeric_code': '643', 'symbol': '₽', 'minor_unit': 2}},
+    "MXN": {'description': 'Mexican peso', 'annotations': {'numeric_code': '484', 'symbol': '$', 'minor_unit': 2}},
+    "TRY": {'description': 'Turkish lira', 'annotations': {'numeric_code': '949', 'symbol': '₺', 'minor_unit': 2}},
+    "PLN": {'description': 'Polish zloty', 'annotations': {'numeric_code': '985', 'symbol': 'zł', 'minor_unit': 2}},
+    "THB": {'description': 'Thai baht', 'annotations': {'numeric_code': '764', 'symbol': '฿', 'minor_unit': 2}},
+    "IDR": {'description': 'Indonesian rupiah', 'annotations': {'numeric_code': '360', 'symbol': 'Rp', 'minor_unit': 2}},
+    "MYR": {'description': 'Malaysian ringgit', 'annotations': {'numeric_code': '458', 'symbol': 'RM', 'minor_unit': 2}},
+    "PHP": {'description': 'Philippine peso', 'annotations': {'numeric_code': '608', 'symbol': '₱', 'minor_unit': 2}},
+    "AED": {'description': 'United Arab Emirates dirham', 'annotations': {'numeric_code': '784', 'minor_unit': 2}},
+    "SAR": {'description': 'Saudi riyal', 'annotations': {'numeric_code': '682', 'minor_unit': 2}},
+    "ILS": {'description': 'Israeli new shekel', 'annotations': {'numeric_code': '376', 'symbol': '₪', 'minor_unit': 2}},
+    "CZK": {'description': 'Czech koruna', 'annotations': {'numeric_code': '203', 'symbol': 'Kč', 'minor_unit': 2}},
+    "HUF": {'description': 'Hungarian forint', 'annotations': {'numeric_code': '348', 'symbol': 'Ft', 'minor_unit': 2}},
+    "RON": {'description': 'Romanian leu', 'annotations': {'numeric_code': '946', 'symbol': 'lei', 'minor_unit': 2}},
+    "UAH": {'description': 'Ukrainian hryvnia', 'annotations': {'numeric_code': '980', 'symbol': '₴', 'minor_unit': 2}},
+    "CLP": {'description': 'Chilean peso', 'annotations': {'numeric_code': '152', 'symbol': '$', 'minor_unit': 0}},
+    "COP": {'description': 'Colombian peso', 'annotations': {'numeric_code': '170', 'symbol': '$', 'minor_unit': 2}},
+    "ARS": {'description': 'Argentine peso', 'annotations': {'numeric_code': '032', 'symbol': '$', 'minor_unit': 2}},
+    "EGP": {'description': 'Egyptian pound', 'annotations': {'numeric_code': '818', 'symbol': '£', 'minor_unit': 2}},
+    "NGN": {'description': 'Nigerian naira', 'annotations': {'numeric_code': '566', 'symbol': '₦', 'minor_unit': 2}},
+    "KES": {'description': 'Kenyan shilling', 'annotations': {'numeric_code': '404', 'symbol': 'Sh', 'minor_unit': 2}},
+    "PKR": {'description': 'Pakistani rupee', 'annotations': {'numeric_code': '586', 'symbol': '₨', 'minor_unit': 2}},
+    "BDT": {'description': 'Bangladeshi taka', 'annotations': {'numeric_code': '050', 'symbol': '৳', 'minor_unit': 2}},
+    "VND": {'description': 'Vietnamese dong', 'annotations': {'numeric_code': '704', 'symbol': '₫', 'minor_unit': 0}},
+    "TWD": {'description': 'New Taiwan dollar', 'annotations': {'numeric_code': '901', 'symbol': '$', 'minor_unit': 2}},
+    "KWD": {'description': 'Kuwaiti dinar', 'annotations': {'numeric_code': '414', 'minor_unit': 3}},
+    "BHD": {'description': 'Bahraini dinar', 'annotations': {'numeric_code': '048', 'minor_unit': 3}},
+    "OMR": {'description': 'Omani rial', 'annotations': {'numeric_code': '512', 'minor_unit': 3}},
+    "QAR": {'description': 'Qatari riyal', 'annotations': {'numeric_code': '634', 'minor_unit': 2}},
+    "ISK": {'description': 'Icelandic krona', 'annotations': {'numeric_code': '352', 'symbol': 'kr', 'minor_unit': 0}},
+}
+
+__all__ = [
+    "CurrencyCode",
+]

src/valuesets/enums/chemistry/identifiers.py

@@ -0,0 +1,47 @@
+"""
+Chemical Identifier Value Sets
+
+Value sets for the identifier schemes used to reference chemical substances. Covers fields such as the PISCES Standard Flowsheet Format chemical registry_id ("CAS number or SMILES string").
+
+Generated from: chemistry/identifiers.yaml
+"""
+
+from __future__ import annotations
+
+from valuesets.generators.rich_enum import RichEnum
+
+class ChemicalIdentifierScheme(RichEnum):
+    """
+    Schemes used to identify chemical substances, including registry numbers, line notations, structure-derived keys, and database accessions.
+    """
+    # Enum members
+    CAS_RN = "CAS_RN"
+    SMILES = "SMILES"
+    INCHI = "INCHI"
+    INCHIKEY = "INCHIKEY"
+    IUPAC_NAME = "IUPAC_NAME"
+    MOLECULAR_FORMULA = "MOLECULAR_FORMULA"
+    PUBCHEM_CID = "PUBCHEM_CID"
+    CHEBI_ID = "CHEBI_ID"
+    KEGG_COMPOUND = "KEGG_COMPOUND"
+    DRUGBANK_ID = "DRUGBANK_ID"
+    EC_NUMBER = "EC_NUMBER"
+
+# Set metadata after class creation
+ChemicalIdentifierScheme._metadata = {
+    "CAS_RN": {'description': 'CAS Registry Number assigned by the Chemical Abstracts Service', 'annotations': {'example': '64-17-5'}},
+    "SMILES": {'description': 'Simplified Molecular-Input Line-Entry System structure notation', 'annotations': {'example': 'CCO'}},
+    "INCHI": {'description': 'IUPAC International Chemical Identifier structure string', 'annotations': {'example': 'InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3'}},
+    "INCHIKEY": {'description': 'Hashed fixed-length form of an InChI', 'annotations': {'example': 'LFQSCWFLJHTTHZ-UHFFFAOYSA-N'}},
+    "IUPAC_NAME": {'description': 'Systematic IUPAC chemical name'},
+    "MOLECULAR_FORMULA": {'description': 'Molecular or empirical chemical formula', 'annotations': {'example': 'C2H6O'}},
+    "PUBCHEM_CID": {'description': 'PubChem Compound Identifier'},
+    "CHEBI_ID": {'description': 'ChEBI ontology identifier'},
+    "KEGG_COMPOUND": {'description': 'KEGG COMPOUND database accession'},
+    "DRUGBANK_ID": {'description': 'DrugBank accession'},
+    "EC_NUMBER": {'description': 'European Community (EINECS/EC) substance number'},
+}
+
+__all__ = [
+    "ChemicalIdentifierScheme",
+]

src/valuesets/enums/process_engineering/__init__.py

@@ -0,0 +1 @@
+"""Auto-generated package."""