Skip to content

ljchueca/Engraulis_encrasicolus_genome

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

43 Commits
00.1.1.1_busco5_odb10.sh
00.1.1.1_busco5_odb10.sh
 
 
00.1.1_hifiasm.sh
00.1.1_hifiasm.sh
 
 
00.2.1_busco5_odb10.sh
00.2.1_busco5_odb10.sh
 
 
00.2_flye.sh
00.2_flye.sh
 
 
00.2_lima.pbmarkdup.sh
00.2_lima.pbmarkdup.sh
 
 
00.3.1_busco5_odb10.sh
00.3.1_busco5_odb10.sh
 
 
00.3_canu.sh
00.3_canu.sh
 
 
01.1_BUSCO_Enen_actinopterygii_odb10.sh
01.1_BUSCO_Enen_actinopterygii_odb10.sh
 
 
01.1_hifiasm.sh
01.1_hifiasm.sh
 
 
01_FastQC.sh
01_FastQC.sh
 
 
01_multiqc.sh
01_multiqc.sh
 
 
02.1_trimmomatic.sh
02.1_trimmomatic.sh
 
 
02.2_trimmomatic.sh
02.2_trimmomatic.sh
 
 
02_fastqc.sh
02_fastqc.sh
 
 
03.1_busco5_odb10.sh
03.1_busco5_odb10.sh
 
 
03.2_backmap.sh
03.2_backmap.sh
 
 
03_trinity.sh
03_trinity.sh
 
 
10_ena_download_data
10_ena_download_data
 
 
11_ena_dowload_data.sh
11_ena_dowload_data.sh
 
 
12_ena_dowload_fastqc.sh
12_ena_dowload_fastqc.sh
 
 
13.1_ena_fastqc.sh
13.1_ena_fastqc.sh
 
 
13.2_ena_cutadapt.sh
13.2_ena_cutadapt.sh
 
 
13.3_ena_cutadapt_fastqc.sh
13.3_ena_cutadapt_fastqc.sh
 
 
13_ena_download_trimmomatic.sh
13_ena_download_trimmomatic.sh
 
 
14.1_busco5_odb10.sh
14.1_busco5_odb10.sh
 
 
14.2_backmap.sh
14.2_backmap.sh
 
 
14_ena_download_trinity.sh
14_ena_download_trinity.sh
 
 
20_ena_download_data
20_ena_download_data
 
 
21.1_ena_download_fastq.sh
21.1_ena_download_fastq.sh
 
 
21_ena_download_data.sh
21_ena_download_data.sh
 
 
22.1_ena_fastqc.sh
22.1_ena_fastqc.sh
 
 
22.2_ena_cutadapt.sh
22.2_ena_cutadapt.sh
 
 
22_ena_download_trimmomatic.sh
22_ena_download_trimmomatic.sh
 
 
23.1_busco5_odb10.sh
23.1_busco5_odb10.sh
 
 
23_ena_trinity.sh
23_ena_trinity.sh
 
 
30_busco_summaries.sh
30_busco_summaries.sh
 
 
31_hifiasm.sh
31_hifiasm.sh
 
 
README.md
README.md
 
 
dc-0.3.1_Enen.sh
dc-0.3.1_Enen.sh
 
 
example_BT.sh
example_BT.sh
 
 

Repository files navigation

Engraulis_encrasicolus_genome

Pipeline for the genome assembly and annotation of Engraulis encrasicolus

About

Pipeline for the genome assembly and annotation of Engraulis encrasicolus

Resources

Readme
Activity

Stars

0 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

 
 
 

Contributors

Languages