[0.6.1] - 2026-01-26
Parser
- Added support for the latest cactus-prepare output format, including
cactus-hal2fastaandcactus-halAppendSubtrees, while preserving legacy parsing. - Improved halmerge root inference from log filenames to keep RaMAx hal-merge skipping behavior consistent.
Tests
- Added coverage for parsing the 9.1.2-style cactus-prepare output sample.