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Data-leakage in ML examples

Status: Open.

#861 In microbiome/OMA;

· raivo-otus opened on Jun 8, 2026

Clarification for ML data preprocessing

Status: Open.

#860 In microbiome/OMA;

· raivo-otus opened on Jun 8, 2026

Some code is too complex

Status: Open.

#859 In microbiome/OMA;

· RiboRings opened on Jun 2, 2026

Exercise instructions aren't always clear

Status: Open.

#858 In microbiome/OMA;

· RiboRings opened on Jun 2, 2026

Two book versions now

Status: Open.

#856 In microbiome/OMA;

· antagomir opened on May 12, 2026

Good reference for tree visualization

Status: Open.

#851 In microbiome/OMA;

· antagomir opened on Apr 10, 2026

Use of r2u Docker images to speed up image building

Status: Open.

#845 In microbiome/OMA;

· artur-sannikov opened on Feb 25, 2026

bump OSCA URL

Status: Open.

#842 In microbiome/OMA;

· 0xMuluh opened on Jan 31, 2026

GitHub Actions failure

Status: Open.

#828 In microbiome/OMA;

· artur-sannikov opened on Jan 14, 2026

addMDS drops smallest sample when sample = min(colSums(assay(tse, "counts")))

Status: Open.

#824 In microbiome/OMA;

· 0xMuluh opened on Nov 23, 2025

Improve rarefaction docs: move explanation earlier & show niter usage for alpha/beta diversity

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#823 In microbiome/OMA;

· 0xMuluh opened on Nov 23, 2025

Confusion/Error on filtering out zero-variance features

Status: Open.

#822 In microbiome/OMA;

· raivo-otus opened on Nov 6, 2025