add Crest study dataset

[0xMuluh]

ping: #110

[antagomir]

There are unresolved comments. Can you respond, or close if they are clear? Then we can assess merge.

[antagomir]

Some checks also failing.

[0xMuluh]

Some checks also failing.

The fail is unrelated. Has to do with gha mac

[antagomir]

Seems good!

[antagomir]

Ok to merge.

[TuomasBorman]

Thanks, final things. Sorry for the delay

1. Is there R script available that produces this data? You could add it.

2. TRUE/FALSE values in colData are characters. Convert to logical.

3. Remove extra data. There are additional assays in many experiments. Moreover, there is shannon index in colData. The data could include only the "raw" data to reduce the memory size and also because these results can be calculated from raw data.

4. Convert sample name format from "Sample-1" to "sample_1" (Underscore is usually safer)

5. rownames(altExp(tse, 4)) could then be formatted similarly to sample names, i.e., "feature_1" as they are generated by us.

[TuomasBorman]

Thanks!