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Modernize GitHub Actions workflows for Node 20 deprecation and release-tag propagation #1167

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4e7aec3
Update singularity deploy actions to Node24-ready versions
Copilot Jun 3, 2026
c0dd8a2
Modernize Docker and release workflows for current action runtimes
Copilot Jun 3, 2026
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10 changes: 5 additions & 5 deletions .github/workflows/main.yml
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Expand Up @@ -21,21 +21,21 @@ jobs:
steps:

- name: Check Out Repo
uses: actions/checkout@v2
uses: actions/checkout@v6

- name: Login to Docker Hub
uses: docker/login-action@v1
uses: docker/login-action@v4
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

- name: Set up Docker Buildx
id: buildx
uses: docker/setup-buildx-action@v1
uses: docker/setup-buildx-action@v4

- name: Build and push
id: docker_build
uses: docker/build-push-action@v2
uses: docker/build-push-action@v7
with:
context: ./
file: ./Dockerfile
Expand All @@ -46,7 +46,7 @@ jobs:
run: echo "digest=${{ steps.docker_build.outputs.digest }}" >> $GITHUB_OUTPUT

- name: Repository Dispatch
uses: peter-evans/repository-dispatch@v1
uses: peter-evans/repository-dispatch@v4
with:
token: ${{ secrets.REPO_ACCESS_TOKEN }}
repository: nextgenusfs/funannotate
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4 changes: 2 additions & 2 deletions .github/workflows/python-publish.yml
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Expand Up @@ -21,9 +21,9 @@ jobs:
runs-on: ubuntu-latest

steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v6
- name: Set up Python
uses: actions/setup-python@v3
uses: actions/setup-python@v6
with:
Comment on lines 23 to 27
python-version: '3.x'
- name: Install dependencies
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22 changes: 9 additions & 13 deletions .github/workflows/release-triggered.yml
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Expand Up @@ -9,6 +9,10 @@ on:

# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
inputs:
release_tag:
description: "Release tag to publish when manually triggered"
required: true

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
Expand All @@ -19,34 +23,26 @@ jobs:

steps:
- name: Check Out Repo
uses: actions/checkout@v2

- name: Get release
id: get_release
uses: kaliber5/action-get-release@v1
with:
token: ${{ github.token }}
latest: true
uses: actions/checkout@v6

- name: Login to Docker Hub
uses: docker/login-action@v1
uses: docker/login-action@v4
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

- name: Set up Docker Buildx
id: buildx
uses: docker/setup-buildx-action@v1
uses: docker/setup-buildx-action@v4

- name: Build and push
id: docker_build
uses: docker/build-push-action@v2
uses: docker/build-push-action@v7
with:
context: ./
file: ./Dockerfile2
push: true
tags: nextgenusfs/funannotate:${{ steps.get_release.outputs.tag_name }}
tags: nextgenusfs/funannotate:${{ inputs.release_tag || github.event.client_payload.tag }}

- name: Image digest
run: echo "digest=${{ steps.docker_build.outputs.digest }}" >> $GITHUB_OUTPUT

29 changes: 11 additions & 18 deletions .github/workflows/release.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,10 @@ on:

# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
inputs:
release_tag:
description: "Release tag to publish when manually triggered"
required: true

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
Expand All @@ -19,45 +23,34 @@ jobs:

steps:
- name: Check Out Repo
uses: actions/checkout@v2

- name: Get release
id: get_release
uses: kaliber5/action-get-release@v1
with:
token: ${{ github.token }}
latest: true

- name: Test git release scrapper
id: test_release
run: echo "tag_name=${{ steps.get_release.outputs.tag_name }}" >> $GITHUB_OUTPUT
uses: actions/checkout@v6

- name: Login to Docker Hub
uses: docker/login-action@v1
uses: docker/login-action@v4
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

- name: Set up Docker Buildx
id: buildx
uses: docker/setup-buildx-action@v1
uses: docker/setup-buildx-action@v4

- name: Build and push
id: docker_build
uses: docker/build-push-action@v2
uses: docker/build-push-action@v7
with:
context: ./
file: ./Dockerfile
push: true
tags: nextgenusfs/funannotate-slim:${{ steps.get_release.outputs.tag_name }}
tags: nextgenusfs/funannotate-slim:${{ inputs.release_tag || github.event.release.tag_name }}

- name: Image digest
run: echo "digest=${{ steps.docker_build.outputs.digest }}" >> $GITHUB_OUTPUT

- name: Repository Dispatch
uses: peter-evans/repository-dispatch@v1
uses: peter-evans/repository-dispatch@v4
with:
token: ${{ secrets.REPO_ACCESS_TOKEN }}
repository: nextgenusfs/funannotate
event-type: docker-hub-release-complete
client-payload: '{"ref": "${{ github.ref }}", "sha": "${{ github.sha }}"}'
client-payload: '{"ref": "${{ github.ref }}", "sha": "${{ github.sha }}", "tag": "${{ inputs.release_tag || github.event.release.tag_name }}"}'
8 changes: 4 additions & 4 deletions .github/workflows/singularity-deploy.yml
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Expand Up @@ -18,9 +18,9 @@ jobs:
runs-on: ubuntu-latest

steps:
- uses: actions/checkout@v1
- uses: actions/checkout@v6

- uses: chrnorm/deployment-action@releases/v1
- uses: chrnorm/deployment-action@v2.0.8
name: Create GitHub deployment
id: deployment
with:
Expand All @@ -30,15 +30,15 @@ jobs:

- name: Update deployment status (success)
if: success()
uses: chrnorm/deployment-status@releases/v1
uses: chrnorm/deployment-status@v2.0.4
with:
token: ${{ secrets.REPO_ACCESS_TOKEN }}
state: "success"
deployment_id: ${{ steps.deployment.outputs.deployment_id }}

- name: Update deployment status (failure)
if: failure()
uses: chrnorm/deployment-status@releases/v1
uses: chrnorm/deployment-status@v2.0.4
with:
token: ${{ secrets.REPO_ACCESS_TOKEN }}
state: "failure"
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10 changes: 5 additions & 5 deletions .github/workflows/triggered-build.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,21 +20,21 @@ jobs:
steps:

- name: Check Out Repo
uses: actions/checkout@v2
uses: actions/checkout@v6

- name: Login to Docker Hub
uses: docker/login-action@v1
uses: docker/login-action@v4
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

- name: Set up Docker Buildx
id: buildx
uses: docker/setup-buildx-action@v1
uses: docker/setup-buildx-action@v4

- name: Build and push
id: docker_build
uses: docker/build-push-action@v2
uses: docker/build-push-action@v7
with:
context: ./
file: ./Dockerfile2
Expand All @@ -45,7 +45,7 @@ jobs:
run: echo "digest=${{ steps.docker_build.outputs.digest }}" >> $GITHUB_OUTPUT

- name: Repository Dispatch
uses: peter-evans/repository-dispatch@v1
uses: peter-evans/repository-dispatch@v4
with:
token: ${{ secrets.REPO_ACCESS_TOKEN }}
repository: nextgenusfs/funannotate
Expand Down