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[DO NOT MERGE] Pseudo PR for first release - #45

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mashehu wants to merge 511 commits into
TEMPLATEfrom
dev
Open

[DO NOT MERGE] Pseudo PR for first release#45
mashehu wants to merge 511 commits into
TEMPLATEfrom
dev

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@mashehu

@mashehu mashehu commented Apr 8, 2026

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Do not merge! This is a PR of dev compared to the TEMPLATE branch for whole-pipeline reviewing purposes.
Changes should be made to dev and this PR should not be merged!

MaximilianStammnitz and others added 30 commits September 3, 2025 18:48
Added note on the importance of including wildtype synonymous codons in the original mutagenesis design.
removing underscores in sample name merges (DiMSum experimental design sheet)
Inactivate DiMSum error modelling step (mainly for small test data set)
BenjaminWehnert1008 and others added 3 commits May 26, 2026 15:29
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
@BenjaminWehnert1008

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@mashehu, @MaximilianStammnitz, I guess it looks good at this point, right? :)
What are the next steps to trigger the release of the pipeline?

@mashehu

mashehu commented Jun 8, 2026

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@BenjaminWehnert1008

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Hi @mashehu, I think that I don't have the rights to set the master as the default branch, which would be the first step to trigger the pipeline release. Can you do it, or can I get the rights to do it? Thanks!:)

@mashehu

mashehu commented Jun 12, 2026

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I will do it

BenjaminWehnert1008 and others added 22 commits June 13, 2026 20:42
…r-correction

edited singularity conatiners
…r-correction

report, snapshot, seqdepth calculation efficiency
…r-correction

conda package versions updated & test snapshot
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 4.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

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4 participants