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nyuhuyang/README.md

👋 Hi, I'm Yang Hu

AI Scientist at Rancho Biosciences

I build AI-driven systems for large-scale single-cell and multi-omics data.

Focus

  • Single-cell genomics & data integration
  • AI + knowledge graph systems for biology
  • Reproducible bioinformatics pipelines (R / Python / Nextflow)
  • Translational research support for pharma

Interests

Biological reasoning systems, scalable analytics, and production-grade statistical automation.

📫 yang.hu@ranchobiosciences.com (work)
📫 hu.yang@nyu.edu (academic)
🔗 https://www.linkedin.com/in/yhu01

Pinned Loading

  1. scRNAseq-MouseEyes scRNAseq-MouseEyes Public

    single cell RNA sequencing for mouse choroid

    R 4 2

  2. scRNAseq-SSCs scRNAseq-SSCs Public

    Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data

    R 11 2

  3. scRNAseq-BladderCancer scRNAseq-BladderCancer Public

    Collaboration with David Mulholland at Mount Sinai for invasive Bladder Cancer

    R 8 6

  4. scRNAseq-Immunosurveillance scRNAseq-Immunosurveillance Public

    This code developed for the study of "Immunosurveillance of HR+ breast cancer - Prophylactic and therapeutic effects of nicotinamide"

    R

  5. scRNAseq-MouseSkinEpithelia scRNAseq-MouseSkinEpithelia Public

    Developed scripts for single-cell RNA-seq study in Yejing Ge et al, The aging skin microenvironment dictates stem cell behavior. PNAS (2020). It focuses on comparing Young vs. Aged mouse skin epith…

    R 4

  6. RNAseq_pipeline RNAseq_pipeline Public

    Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

    HTML 2 1