chore: 🏗️ add REDCap data download step to pytask#171
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martonvago
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Jul 24, 2026
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| import feasibility_data.common.json as cj | ||
| import feasibility_data.common.redcap as cr | ||
| import feasibility_data.data.redcap.raw as dr |
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These abbreviations are starting to get a bit confusing 😅
martonvago
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Jul 24, 2026
| ], | ||
| ) -> None: | ||
| """Download the latest data from all centers to `RAW_REDCAP/<timestamp>.csv.gz`.""" | ||
| for center in [cr.Center.Copenhagen]: |
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This is a nod towards being aware that we need to handle different centers without actually handling them.
martonvago
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Jul 24, 2026
| def task_download_data( | ||
| raw_data_dir: Annotated[ | ||
| Path, | ||
| DirectoryNode(root_dir=RAW_REDCAP, pattern="*.csv.gz"), |
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Tells Pytask that this task produces files in the specified directory that match the pattern. Later steps will be triggered by changes in this folder (i.e. file additions).
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Description
This PR adds the REDCap data download step to Pytask.
Closes #167
Needs a quick review.
Checklist
just run-all