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4 repositories

ESDP
Public
Decision-support framework for adaptive early stopping in Oxford Nanopore genome polishing.
Python
•
MIT License
•1•0•0•0•Updated Mar 12, 2026Mar 12, 2026
ONT_BACTERIAL_ANALYSIS
Public
A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.
assembly sequencing amr
assembly sequencing amr microbiology wgs oxford-nanopore illumina-sequencing long-reads hybrid-assembly antimicrobial-resistance
Nextflow
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GNU General Public License v3.0
•1•2•0•0•Updated Mar 6, 2026Mar 6, 2026
WGS-Analysis-VariantCalling
Public
Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and refer…
assembly variant-calling wgs
assembly variant-calling wgs illumina variantcalling bacterial-genomes
Nextflow
•
GNU General Public License v3.0
•2•6•0•0•Updated Mar 6, 2026Mar 6, 2026
.github
Public
Files for @AMRmicrobiology GitHub organisation
0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

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