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@ARTbio ARTbio Bioinformatics facility at the IBPS

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    50 repositories

    • galaxyXpand

      Public
      Ansible Playbook for Galaxy server deployment
      Jinja
      •
      GNU General Public License v3.0
      •2•0•1•1•Updated Apr 23, 2026Apr 23, 2026

    • jupyterhub

      Public
      Multi-user server for Jupyter notebooks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2.1k•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • tools-artbio

      Public
      Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
      bioinformaticsbioinformatics-pipelinegalaxy
      bioinformaticsbioinformatics-pipelinegalaxyartbio-platform
      Python
      •
      MIT License
      •17•12•4•3•Updated Jan 16, 2026Jan 16, 2026

    • startbio

      Public
      Training Material of the STARTbio program
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•3•0•0•Updated Nov 24, 2025Nov 24, 2025

    • AnalyseGenome

      Public
      A repository for the training material of the course "Analyse des Génomes"
      bioinformaticsgalaxy-project
      bioinformaticsgalaxy-project
      Shell
      •0•0•2•0•Updated Nov 14, 2025Nov 14, 2025

    • ansible-galaxy-tools

      Public
      An Ansible role for automated installation of tools from a Tool Shed into Galaxy.
      Python
      •
      Other
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.9k•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • Run-Galaxy

      Public
      Run Galaxy training course https://artbio.github.io/startbio/Run-Galaxy/
      Shell
      •
      MIT License
      •0•0•2•0•Updated Oct 14, 2025Oct 14, 2025

    • iwc

      Public
      Intergalactic Workflow Commission
      89•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • GalaxyKickStart

      Public
      Ansible playbooks for Galaxy Server deployment
      ansibleansible-playbooksgalaxy
      ansibleansible-playbooksgalaxygalaxy-rolesgalaxy-server
      HTML
      •
      GNU General Public License v3.0
      •23•24•2•0•Updated Oct 14, 2025Oct 14, 2025

    • usePsilo

      Public
      Public documentation and DMPs for Psilo
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • elabftw

      Public
      :notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
      PHP
      •
      GNU Affero General Public License v3.0
      •292•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •508•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • ansible-slurm

      Public
      Ansible role for installing and managing the Slurm Workload Manager
      Jinja
      •59•0•0•0•Updated Dec 29, 2023Dec 29, 2023

    • ansible-galaxy

      Public
      An Ansible role for managing a Galaxy (http://galaxyproject.org) server.
      Jinja
      •73•0•0•0•Updated Dec 29, 2023Dec 29, 2023

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•0•0•0•Updated Feb 4, 2023Feb 4, 2023

    • glioblastoma_senescence

      Public
      R scripts used for the analysis of senescence in "Cellular senescence in malignant cells promotes tumor progression in mouse and patient Glioblastoma", Salam, …
      R
      •1•0•0•0•Updated Jan 11, 2023Jan 11, 2023

    • ephemeris

      Public
      Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
      Python
      •
      Other
      •42•0•0•0•Updated Oct 23, 2021Oct 23, 2021

    • ansible-galaxy-os

      Public
      An Ansible role is for configuring the base operating system useful for running Galaxy.
      MIT License
      •18•0•0•0•Updated Sep 14, 2021Sep 14, 2021

    • galaxytools

      Public
      :microscope::books: Galaxy Tool wrappers
      HTML
      •263•0•0•0•Updated May 6, 2021May 6, 2021

    • ansible-galaxy-extras

      Public
      Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production se…
      Jinja
      •
      Other
      •39•0•0•0•Updated Apr 30, 2021Apr 30, 2021

    • ansible-postgresql-objects

      Public
      A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).
      12•0•0•0•Updated Apr 25, 2021Apr 25, 2021

    • ansible-miniconda-role

      Public
      ansible role to install miniconda, Python-agnostic binary package manager
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •16•0•0•0•Updated Apr 23, 2021Apr 23, 2021

    • ansible-trackster

      Public
      An Ansible role for setting up Trackster (somewhat tailored for use with Galaxy CloudMan).
      MIT License
      •2•0•0•0•Updated Apr 23, 2021Apr 23, 2021

    • usegalaxy-playbook

      Public
      Ansible Playbook for usegalaxy.org
      Shell
      •
      Academic Free License v3.0
      •30•0•0•0•Updated Mar 11, 2021Mar 11, 2021

    • hrdetect-pipeline

      Public
      R
      •
      Other
      •14•0•0•0•Updated Mar 7, 2021Mar 7, 2021

    • genomic-analysis-test

      Public
      Instructions for genomic analysis of patient data
      1•0•0•0•Updated Sep 27, 2020Sep 27, 2020

    • SARS-CoV-2

      Public
      Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
      Jupyter Notebook
      •76•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • gx-it-proxy

      Public
      JavaScript
      •20•0•0•0•Updated Mar 3, 2020Mar 3, 2020

    • docker-rstudio-notebook

      Public
      RStudio running in a docker container. This image can be used to integrate RStudio into Galaxy
      Dockerfile
      •
      MIT License
      •18•0•0•0•Updated Dec 18, 2019Dec 18, 2019
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