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    35 repositories

    • CAMISIM

      Public
      CAMISIM: Simulating metagenomes and microbial communities
      simulationmetagenomics
      simulationmetagenomics
      Python
      •
      Apache License 2.0
      •40•223•5•1•Updated Apr 21, 2026Apr 21, 2026

    • AMBER

      Public
      AMBER: Assessment of Metagenome BinnERs
      benchmarkingmetagenomicsbinning
      benchmarkingmetagenomicsbinningbiobox
      Python
      •
      GNU General Public License v3.0
      •6•33•1•0•Updated Apr 14, 2026Apr 14, 2026

    • OPAL

      Public
      OPAL: Open-community Profiling Assessment tooL
      Python
      •
      Apache License 2.0
      •6•30•5•0•Updated Apr 14, 2026Apr 14, 2026

    • CAMITAX

      Public
      CAMITAX: Taxon labels for microbial genomes
      Nextflow
      •
      Apache License 2.0
      •5•31•4•0•Updated Dec 14, 2023Dec 14, 2023

    • second_challenge_evaluation

      Public
      Repository for codes, analyses and visualizations for the CAMI II challenges
      HTML
      •6•14•9•0•Updated Sep 4, 2023Sep 4, 2023

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.9k•0•0•0•Updated May 22, 2023May 22, 2023

    • data

      Public
      Pointers to publicly available assembly, binning, and profiling results
      HTML
      •5•3•4•0•Updated Nov 5, 2021Nov 5, 2021

    • file_formats

      Public
      0•0•0•0•Updated Nov 6, 2020Nov 6, 2020

    • contest_information

      Public
      File format specifications, Presentation materials and other information
      MIT License
      •1•3•4•0•Updated Nov 6, 2020Nov 6, 2020

    • CamiClient

      Public
      Java
      •1•1•2•1•Updated Oct 13, 2020Oct 13, 2020

    • university-email-domains

      Public
      Domains used for university-issued email addresses
      14•0•0•0•Updated May 26, 2020May 26, 2020

    • BenchmarkingToolkitTutorial

      Public
      1•1•1•0•Updated Mar 6, 2020Mar 6, 2020

    • docker_profiling_tools

      Public
      Stefans Collection of Dockerfiles and helper scripts for profiling tools
      Perl
      •
      GNU General Public License v3.0
      •4•2•3•0•Updated Feb 28, 2020Feb 28, 2020

    • ObjectStorageWrapper

      Public
      Java
      •0•0•0•0•Updated Nov 21, 2018Nov 21, 2018

    • CamiIO

      Public
      Java
      •0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

    • firstchallenge_evaluation

      Public
      Directory containing example result visualizations and scripts for generating figures and tables
      R
      •3•2•12•0•Updated Sep 17, 2018Sep 17, 2018

    • CAMISIM-DATA

      Public
      Supplementary data for CAMISIM
      Creative Commons Attribution 4.0 International
      •0•1•1•0•Updated Jul 19, 2018Jul 19, 2018

    • MetagenomeSimulationPipeline

      Public
      The metagenome simulation pipeline was permanently moved to its new destination: https://github.com/CAMI-challenge/CAMISIM
      0•1•0•0•Updated Mar 8, 2018Mar 8, 2018

    • bbx-profiling-evaluation-dk

      Public
      Python
      •
      MIT License
      •1•1•3•0•Updated Nov 2, 2017Nov 2, 2017

    • quast

      Public
      Shell
      •0•0•0•0•Updated Sep 7, 2017Sep 7, 2017

    • genome_binning_evaluation

      Public
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Aug 23, 2017Aug 23, 2017

    • bbx-binning-evaluation-jd

      Public
      A biobox for CAMI binning evaluation
      Python
      •1•1•4•0•Updated Jul 19, 2017Jul 19, 2017

    • quast_frc

      Public
      Genome assembly evaluation tool
      C
      •
      Other
      •88•0•0•0•Updated May 5, 2017May 5, 2017

    • frc_hacking

      Public
      0•0•0•0•Updated May 4, 2017May 4, 2017

    • bbx-profiling-evaluation-krona

      Public
      Perl
      •0•0•0•0•Updated Apr 23, 2017Apr 23, 2017

    • cami-concoct

      Public
      Biobox of the binning tool CONCOCT for the cami challenge
      Python
      •0•1•0•0•Updated Jun 27, 2016Jun 27, 2016

    • bbx-binning-evaluation-ig

      Public
      Python
      •0•0•2•0•Updated Jan 14, 2016Jan 14, 2016

    • evaluation

      Public
      Evaluation tools
      Python
      •
      MIT License
      •0•0•2•0•Updated Sep 3, 2015Sep 3, 2015

    • docker-camibase-profiling

      Public
      A container image to use for metagenomic community profiling programs
      Shell
      •0•0•1•0•Updated May 5, 2015May 5, 2015

    • docker-camibase-binning-evaluation

      Public
      Shell
      •0•0•0•0•Updated Feb 20, 2015Feb 20, 2015
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