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@CirculatoryHealth Circulatory Health - UMC Utrecht

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    26 repositories

    • gwas2cojo

      Public
      gwas2cojo
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 5, 2026Apr 5, 2026

    • PlaqueMorphology_Ancestry_Public

      Public
      HTML
      •
      Other
      •0•1•0•0•Updated Nov 21, 2025Nov 21, 2025

    • PHENOMICL

      Public
      Apply machine or deep learning to high-resolution, histological slide images
      Python
      •
      Other
      •1•2•0•0•Updated Sep 3, 2025Sep 3, 2025

    • PHENOMICL_downstream

      Public
      HTML
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • LoFTK

      Public
      The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes, identifying genes that…
      loss-of-functionlofs
      loss-of-functionlofs
      Perl
      •
      Creative Commons Attribution Share Alike 4.0 International
      •4•10•2•0•Updated Jul 30, 2025Jul 30, 2025

    • MR_CVD_MDD

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jul 18, 2025Jul 18, 2025

    • RePlaq

      Public
      Replicating the expression quantitative trait loci of carotid Plaques in the Athero-Express Biobank Study
      HTML
      •
      MIT License
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • AE_20211201_YAW_SWVANDERLAAN_HDAC9

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • QTLToolKit2

      Public archive
      A workflow based on QTLtools and tensorQTL to run cis- and trans-QTL analyses (SLURM based).
      qtlqtl-analysis
      qtlqtl-analysis
      Shell
      •7•0•0•0•Updated Apr 20, 2024Apr 20, 2024

    • AAO_IschemicStroke

      Public
      Additional figures and analyses for the age at onset of ischemic stroke meta-GWAS.
      C++
      •
      Other
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • EntropyMasker

      Public
      A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained sa…
      histologywhole-slide-imagingimage-masking
      histologywhole-slide-imagingimage-masking
      Jupyter Notebook
      •
      Other
      •1•2•2•2•Updated Oct 4, 2023Oct 4, 2023

    • ExpressScan_Glycophorin

      Public
      Scripts used for the "Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms" paper.
      cellprofilerslidetoolkitdigital-pathology
      cellprofilerslidetoolkitdigital-pathologywhole-slide-imagingplaqueatherosclerosisplaque-characteristicexpressscan
      HTML
      •
      Other
      •0•1•0•0•Updated Sep 12, 2023Sep 12, 2023

    • CHARGE_1000G_CAC

      Public
      CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, an…
      gwasrnaseqscrna-seq
      gwasrnaseqscrna-seqgenome-wide-association-studiescoronary-artery-calcificationregional-association-plots
      HTML
      •
      MIT License
      •0•4•0•0•Updated Aug 29, 2023Aug 29, 2023

    • EndoMT_in_AE

      Public
      HTML
      •
      Other
      •0•1•0•0•Updated May 26, 2023May 26, 2023

    • AE_20190912_010_MDICHGANS_SWVDLAAN_IL6_MCP1

      Public
      Project with the group of Martin Dichgans regarding MCP1 in plaques.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2022Nov 18, 2022

    • AE_171212_9p21_IRAK4

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Nov 18, 2022Nov 18, 2022

    • Sex_differences_scRNA

      Public
      Sex differences in atherosclerotic lesions are driven by both cell specific RNA expression and cellular composition
      0•1•0•0•Updated Oct 13, 2022Oct 13, 2022

    • AE_OLINK_LPL_and_MACE

      Public
      Accompanying 'Plasma Lipoprotein Lipase is associated with Risk for Future Major Adverse Cardiovascular Events in Patients Following Carotid Endarterectomy'
      R
      •
      Other
      •0•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • kai6662.github.io

      Public template
      (Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •437•0•0•0•Updated Sep 13, 2022Sep 13, 2022

    • MicroanatomyHumanPlaque_scRNAseq

      Public
      Scripts accompanying "Microanatomy of the human atherosclerotic plaque by single-cell transcriptomics"
      R
      •
      MIT License
      •6•12•1•0•Updated Apr 20, 2022Apr 20, 2022

    • gwas2single

      Public
      R
      •
      Other
      •1•2•0•0•Updated Apr 20, 2022Apr 20, 2022

    • idiverge

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • .github

      Public
      0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • UKBioPick

      Public
      The UKBioPick allows extraction of interested UK Biobank phenotypes.
      Shell
      •
      MIT License
      •0•4•2•0•Updated Feb 16, 2022Feb 16, 2022

    • BlandAltman

      Public
      Example code of the Bland-Altman test.
      HTML
      •
      MIT License
      •1•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • PlaqueCluster

      Public
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•2•0•0•Updated Jun 11, 2021Jun 11, 2021
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