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    224 repositories

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•4•0•2•Updated Apr 24, 2026Apr 24, 2026

    • hprc-qc

      Public
      Perl
      •
      Apache License 2.0
      •1•2•3•1•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•7•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•16•0•3•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-genes-containers

      Public
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•3•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•10•2•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•2•0•2•Updated Apr 24, 2026Apr 24, 2026

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •6•2•0•3•Updated Apr 23, 2026Apr 23, 2026

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •36•18•0•1•Updated Apr 23, 2026Apr 23, 2026

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •6•1•0•5•Updated Apr 22, 2026Apr 22, 2026

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 22, 2026Apr 22, 2026

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•1•Updated Apr 22, 2026Apr 22, 2026

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Apr 22, 2026Apr 22, 2026

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •3•1•0•2•Updated Apr 22, 2026Apr 22, 2026

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •53•22•0•0•Updated Apr 22, 2026Apr 22, 2026

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •48•9•0•0•Updated Apr 22, 2026Apr 22, 2026

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •10•42•1•0•Updated Apr 22, 2026Apr 22, 2026

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •2•3•0•10•Updated Apr 21, 2026Apr 21, 2026

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•11•1•4•Updated Apr 21, 2026Apr 21, 2026

    • ensembl-elements

      Public
      Ensembl shared elements
      TypeScript
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 21, 2026Apr 21, 2026

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformatics
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •68•55•0•2•Updated Apr 20, 2026Apr 20, 2026

    • ensembl-genes-metadata

      Public
      3•3•3•4•Updated Apr 20, 2026Apr 20, 2026

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •11•9•0•3•Updated Apr 20, 2026Apr 20, 2026

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •45•13•0•4•Updated Apr 15, 2026Apr 15, 2026

    • ensembl-taxonomy

      Public
      API for accessing NCBI taxonomy
      apiperlensembl
      apiperlensemblncbi-taxonomy
      Perl
      •
      Apache License 2.0
      •3•1•0•0•Updated Apr 15, 2026Apr 15, 2026

    • distiller

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 15, 2026Apr 15, 2026

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •1•0•1•1•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •177•545•69•6•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-datacheck-py

      Public
      Python
      •
      Apache License 2.0
      •4•2•0•4•Updated Apr 10, 2026Apr 10, 2026
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