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    22 repositories

    • metagenomeSeq

      Public
      Statistical analysis for sparse high-throughput sequencing
      R
      •21•72•32•0•Updated Dec 17, 2024Dec 17, 2024

    • scTreeViz

      Public
      R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
      hierarchysingle-cell-rna-seqtreeviz
      hierarchysingle-cell-rna-seqtreeviz
      R
      •3•11•1•0•Updated Mar 10, 2022Mar 10, 2022

    • iDA

      Public
      iDA: dimensionality reduction for latent structure discovery
      rna-seq-analysisscrna-seq-analysisrstats-package
      rna-seq-analysisscrna-seq-analysisrstats-package
      R
      •
      Other
      •4•4•0•0•Updated Jul 19, 2021Jul 19, 2021

    • scTreeViz-vignette

      Public
      0•0•0•0•Updated May 3, 2021May 3, 2021

    • yanagi

      Public
      Transcript Segment Library Construction for RNA-Seq Quantification
      Python
      •3•8•2•1•Updated Feb 11, 2021Feb 11, 2021

    • antiProfiles

      Public
      This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/antiProfiles.html Bug Reports:…
      R
      •1•0•0•0•Updated Apr 2, 2020Apr 2, 2020

    • metagenomeFeatures

      Public
      R package for annotating metagenomic datasets with taxonomic information
      R
      •5•10•11•0•Updated Feb 11, 2020Feb 11, 2020

    • MicrobiomeExperiment

      Public
      Bioconductor defining a summarizedExperiment class (metagenomeSE) for metagenomic data.
      R
      •4•1•12•0•Updated Dec 18, 2019Dec 18, 2019

    • Wrench

      Public
      Compositional correction and normalization for sparse, under-sampled count data
      R
      •2•6•2•0•Updated Feb 25, 2019Feb 25, 2019

    • ribosomaldatabaseproject11.5MgDb

      Public
      Bioconductor annotation package for RDP 16S rRNA database version 11.5
      R
      •1•0•0•0•Updated Oct 28, 2018Oct 28, 2018

    • silva128.1MgDb

      Public
      SILVA SSR rRNA release 128.1 Annotation Data
      R
      •1•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • greengenes13.5MgDb

      Public
      R
      •3•1•0•0•Updated May 1, 2018May 1, 2018

    • epiviz-app-demo

      Public
      HTML
      •0•0•0•0•Updated Mar 15, 2017Mar 15, 2017

    • epiviz-environment

      Public
      HTML
      •0•0•0•0•Updated Mar 13, 2017Mar 13, 2017

    • epivizGviz

      Public
      R
      •0•0•0•0•Updated Sep 27, 2016Sep 27, 2016

    • workshopBioc2016

      Public
      R
      •
      Other
      •3•0•0•0•Updated Jul 31, 2016Jul 31, 2016

    • bioc2016Addendum

      Public
      R
      •
      Other
      •2•0•0•0•Updated Jun 25, 2016Jun 25, 2016

    • ISCB_DC_workshop

      Public
      HTML
      •0•0•0•0•Updated Jun 15, 2016Jun 15, 2016

    • methylation_protocol

      Public
      HTML
      •0•1•0•0•Updated Jun 10, 2016Jun 10, 2016

    • MicrobiomeSC

      Public
      MicrobiomeSC is a metagenomics analysis suite using a secure multi-party computation technique known as garbled circuits.
      Java
      •1•2•0•0•Updated Apr 6, 2016Apr 6, 2016

    • metagenomeSeq-1

      Public
      This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/metagenomeSeq.html Contributio…
      R
      •2•0•0•0•Updated Dec 15, 2015Dec 15, 2015

    • qsmooth

      Public
      Normalization of high-throughput genomics data
      R
      •3•1•0•0•Updated Dec 7, 2015Dec 7, 2015
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