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    • Python
      MIT License
      1000Updated Feb 3, 2026Feb 3, 2026
    • NoRI

      Public
      Pipeline for kidney tissue segmentation & quantification using Normalized Raman Imaging (NoRI) with SAM & Ilastik.
      Python
      1000Updated Feb 2, 2026Feb 2, 2026
    • bobiac

      Public
      Teaching materials for Boston Bioimage Analysis Course (BoBiAC).
      Jupyter Notebook
      7600Updated Jan 16, 2026Jan 16, 2026
    • Documentation page
      HTML
      0200Updated Nov 25, 2025Nov 25, 2025
    • GBI-india

      Public
      Global BioImaging Image Data 2025 Course - Pune, India
      Jupyter Notebook
      MIT License
      0000Updated Jun 18, 2025Jun 18, 2025
    • Jupyter Notebook
      MIT License
      1110Updated Jun 11, 2025Jun 11, 2025
    • Teaching materials for Boston Bioimage Analysis Course (BoBiAC).
      Jupyter Notebook
      1000Updated May 12, 2025May 12, 2025
    • Diffusion models for microscopy image generation
      Python
      0000Updated Mar 26, 2025Mar 26, 2025
    • Jupyter Notebook
      MIT License
      1000Updated Mar 14, 2025Mar 14, 2025
    • Python
      MIT License
      1000Updated Feb 19, 2025Feb 19, 2025
    • Materials supporting the QuPath workshop at Harvard Medical School.
      Creative Commons Attribution 4.0 International
      1400Updated Feb 10, 2025Feb 10, 2025
    • dashai

      Public
      Jupyter Notebook
      0000Updated Feb 1, 2025Feb 1, 2025
    • Materials supporting the Fiji Macro workshop at Harvard Medical School.
      Creative Commons Attribution 4.0 International
      0000Updated Jan 27, 2025Jan 27, 2025
    • This is a collection of exercises for the open-source Fiji software.
      JavaScript
      1000Updated Jan 27, 2025Jan 27, 2025
    • Materials supporting the ImageJ/Fiji workshop at Harvard Medical School.
      Creative Commons Attribution 4.0 International
      2000Updated Jan 27, 2025Jan 27, 2025
    • Jupyter Notebook
      MIT License
      3000Updated Nov 8, 2024Nov 8, 2024
    • BIA-QC

      Public
      Quality control for bioimage analysis
      Python
      MIT License
      1100Updated Oct 19, 2024Oct 19, 2024
    • workshop-template

      Public template
      Sphinx template to host workshop materials with versioning support.
      Creative Commons Attribution 4.0 International
      0000Updated Oct 4, 2024Oct 4, 2024
    • An image analysis pipeline for quantifying the spatial distribution of cell markers in stroma-rich tumors
      Jupyter Notebook
      MIT License
      1200Updated Sep 18, 2024Sep 18, 2024
    • .github

      Public
      About
      0200Updated Jun 15, 2024Jun 15, 2024
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