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    22 repositories

    • COMO

      Public
      Identify drug targets and potentially repurposable drugs for metabolism-impacting diseases
      Python
      •
      GNU General Public License v3.0
      •8•11•24•18•Updated Apr 21, 2026Apr 21, 2026

    • FastqToGeneCounts

      Public
      This is an automated pipeline to map SRR files to gene counts
      Python
      •
      MIT License
      •2•3•7•1•Updated Apr 6, 2026Apr 6, 2026

    • COMO-CC

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•2•Updated Oct 23, 2024Oct 23, 2024

    • COMO-data

      Public
      This contains data files for COMO usage
      0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • ccNetViz

      Public
      JavaScript library for visualization of large-scale network graphs using WebGL
      JavaScript
      •41•94•19•47•Updated Oct 27, 2023Oct 27, 2023

    • utilities

      Public
      This is an overview of the projects the Helikar Lab has created
      0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • DBERlibR

      Public
      Automatic Assessment Data Aanlysis for Descipline-Based Education Research
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Sep 13, 2023Sep 13, 2023

    • ccBooleanAnalysis

      Public
      JavaScript
      •7•3•0•13•Updated Jul 3, 2023Jul 3, 2023

    • DeepGEMM

      Public
      Python
      •
      GNU General Public License v3.0
      •2•1•1•0•Updated Mar 27, 2023Mar 27, 2023

    • ode-app

      Public
      Web Application for ODE-Based Models
      JavaScript
      •2•4•2•2•Updated Feb 24, 2023Feb 24, 2023

    • candis

      Public
      :ribbon: A data mining suite for gene expression data.
      reactreduxpython
      reactreduxpythonflaskmachine-learningdata-miningbioinformaticsrweka
      JavaScript
      •
      GNU General Public License v3.0
      •22•27•13•43•Updated Dec 22, 2022Dec 22, 2022

    • cobra-app

      Public
      Web Application for Flux Balance Analysis
      JavaScript
      •1•5•1•15•Updated Dec 11, 2022Dec 11, 2022

    • MADRID_docker_old

      Public
      Old docker items from MADRID
      0•0•0•0•Updated Sep 26, 2022Sep 26, 2022

    • multiscale-CD4Tcells

      Public
      Multi-cellular, multi-scale model of CD4+ T cells integrating multiple mathematical and computational approaches.
      MATLAB
      •
      GNU General Public License v3.0
      •4•7•0•1•Updated Sep 7, 2022Sep 7, 2022

    • ccNetViz-logo

      Public
      HTML
      •1•2•1•1•Updated Jan 23, 2020Jan 23, 2020

    • sysbio

      Public archive
      Homebrew Taps for System Biology Tools
      0•0•0•0•Updated Jun 3, 2019Jun 3, 2019

    • CancerDiscover

      Public
      Open-source software pipeline for cancer classification from high-throughput data using machine learning.
      machine-learningopensourceweka
      machine-learningopensourcewekacancer-genomicscancer-data
      Perl
      •
      GNU General Public License v3.0
      •9•19•1•0•Updated Feb 19, 2019Feb 19, 2019

    • node-http-proxy-json

      Public
      for node-http-proxy to modify response json from the server
      JavaScript
      •
      MIT License
      •38•0•0•0•Updated Dec 20, 2018Dec 20, 2018

    • StatisticalPlatform

      Public
      Interactive Platform for Statistical Computing
      JavaScript
      •
      GNU General Public License v3.0
      •6•4•2•0•Updated Aug 13, 2018Aug 13, 2018

    • get-cc

      Public archive
      Cell Collective Installer
      0•0•0•0•Updated Jun 19, 2018Jun 19, 2018

    • ccapidocs

      Public
      Beautiful static documentation for your API
      JavaScript
      •
      Other
      •21k•0•0•0•Updated Nov 3, 2017Nov 3, 2017

    • candis-res

      Public
      Sample Data for CancerDiscover and candis. github.com/HelikarLab/candis
      1•1•0•0•Updated Sep 4, 2017Sep 4, 2017
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