Repositories list

• xmipp3-installer

  Public
  Python package that handles the installation of xmipp3

  Python

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•11 pull request•Updated Apr 22, 2026Apr 22, 2026

• xmipp3

  Public
  Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.

  cryo-emcryoemscipion

  cryo-emcryoemscipion

  C++

  •

  GNU General Public License v3.0

  •1616 forks•4343 stars•55 issues•33 pull requests•Updated Apr 21, 2026Apr 21, 2026

• scipion-em-xmipp

  Public
  Plugin to use Xmipp programs within the Scipion framework

  Python

  •

  GNU General Public License v3.0

  •66 forks•1010 stars•66 issues•99 pull requests•Updated Apr 21, 2026Apr 21, 2026

• xmipp-portal

  Public
  Python

  •

  GNU General Public License v3.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• scipion-em-SPALake

  Public
  Plugin to collect data from SPA workflows and push to the database SPA-Lake

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• docs

  Public
  Documentation for the xmipp world

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• pyxmipp3

  Public
  Minimal xmipp3 for Python binding

  C++

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•11 pull request•Updated Feb 24, 2026Feb 24, 2026

• buildbot

  Public
  buildbot setup for automated tests

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• scipion-em-validation

  Public
  Code for the I2PC validation server

  Python

  •11 fork•33 stars•00 issues•11 pull request•Updated Feb 13, 2026Feb 13, 2026

• cuFFTAdvisor

  Public
  Tool for generating efficient setting of the cuFFT library

  C++

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2026Feb 13, 2026

• xmippViz

  Public
  Visualization programs and functions for Xmipp and sharing with other packages (like Scipion)

  Java

  •

  GNU General Public License v3.0

  •00 forks•11 star•1919 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• xmippCore

  Public
  Core functions for Xmipp and sharing with other packages (like Scipion)

  C++

  •

  GNU General Public License v3.0

  •33 forks•44 stars•11 issue•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• scipion-em-xmippDLTK

  Public
  Plugin to use Xmipp protocols that requires DeepLearningToolkit environments, within the Scipion framework

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• scipion-containers

  Public
  Set of recipes to build containerised Scipion "et al" images

  Shell

  •

  GNU General Public License v3.0

  •00 forks•33 stars•11 issue•22 pull requests•Updated Jan 28, 2026Jan 28, 2026

• web-oscem-viewer

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 21, 2026Jan 21, 2026

• xmippDoc

  Public
  Xmipp API Documentation

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 8, 2026Jan 8, 2026

• scipion-em-xmipptomo

  Public
  Xmipp tomography protocols

  Python

  •

  GNU General Public License v3.0

  •00 forks•44 stars•77 issues•33 pull requests•Updated Jan 5, 2026Jan 5, 2026

• emhub

  Public
  Web application for monitor EM results

  Python

  •

  GNU General Public License v3.0

  •66 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• xmippJavaDoc

  Public
  Xmipp Java API documentation

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• xmippPythonDoc

  Public
  Xmipp python API documentation

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• scipion-portal

  Public
  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•22 pull requests•Updated Nov 5, 2025Nov 5, 2025

• Flexutils-Scripts

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2025Oct 9, 2025

• Flexutils-Toolkit

  Public
  Python

  •

  GNU General Public License v3.0

  •11 fork•55 stars•33 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• ttomotools

  Public
  Set of tools for CryoET image processing based on TeamTomo's libraries

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 25, 2025Jul 25, 2025

• scipion-courses

  Public
  material for Scipion courses

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 20, 2025Jun 20, 2025

• scipion-afm

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2025Apr 25, 2025

• scipion-scripts

  Public
  Scipion sample scripts

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Oct 28, 2024Oct 28, 2024

• scipion-em-xmippBase

  Public
  Repository to provide base protocols and functionalities to scipion-em-xmipp and scipion-em-xmippTomo

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 11, 2024Oct 11, 2024

• web-workflow-viewer

  Public
  HTML Workflow viewer based on workflow json files exported from Scipion.

  JavaScript

  •11 fork•11 star•00 issues•00 pull requests•Updated Sep 2, 2024Sep 2, 2024

• EMadmin

  Public
  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•11 issue•00 pull requests•Updated Apr 8, 2024Apr 8, 2024