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    • Vessel Graph Reconstruction from Learned Voxel-wise Direction Vectors in 3D Vascular Images
      MIT License
      0000Updated Apr 10, 2026Apr 10, 2026
    • fisbe

      Public
      SCSS
      0000Updated Apr 8, 2026Apr 8, 2026
    • Evaluation scripts for nuclei instance segmentation in 2d and 3d
      Python
      MIT License
      3700Updated Mar 31, 2026Mar 31, 2026
    • Jupyter Notebook
      MIT License
      1310Updated Mar 26, 2026Mar 26, 2026
    • nnUNet

      Public
      Python
      Apache License 2.0
      2.4k000Updated Mar 24, 2026Mar 24, 2026
    • aqqua

      Public
      JavaScript
      0100Updated Mar 24, 2026Mar 24, 2026
    • HTML
      1001Updated Jan 22, 2026Jan 22, 2026
    • vr-viewer

      Public
      JavaScript
      MIT License
      0000Updated Nov 3, 2025Nov 3, 2025
    • Python
      0120Updated Oct 20, 2025Oct 20, 2025
    • Jupyter Notebook
      0000Updated Oct 15, 2025Oct 15, 2025
    • Benchmarking the ability of pathology foundation models to do cell type classification
      Python
      MIT License
      1800Updated Sep 25, 2025Sep 25, 2025
    • Determines Longhurst Province for a given Lat/Long coordinate
      Python
      MIT License
      8001Updated Jul 11, 2025Jul 11, 2025
    • brainbow

      Public
      Python
      0110Updated Jun 26, 2025Jun 26, 2025
    • Contains dataloaders for popular bio-medical image datasets.
      Python
      MIT License
      0121Updated Apr 10, 2025Apr 10, 2025
    • Scripts for skeletonization and branching point analysis
      Python
      0000Updated Mar 5, 2025Mar 5, 2025
    • arctique

      Public
      Python
      GNU General Public License v3.0
      11001Updated Jan 14, 2025Jan 14, 2025
    • CutLER

      Public
      Code release for "Cut and Learn for Unsupervised Object Detection and Instance Segmentation" and "VideoCutLER: Surprisingly Simple Unsupervised Video Instance S…
      Python
      Other
      108000Updated Dec 16, 2024Dec 16, 2024
    • PyTorch code and models for the DINOv2 self-supervised learning method.
      Jupyter Notebook
      Apache License 2.0
      1.2k110Updated Nov 21, 2024Nov 21, 2024
    • Python
      0000Updated Jul 18, 2024Jul 18, 2024
    • PEERCE

      Public
      PEERCE, PD-L1 Expression Estimation for Rare Cancer Entities
      Python
      MIT License
      0400Updated Jun 3, 2024Jun 3, 2024
    • ACTIS

      Public
      Python
      Other
      1010Updated Jan 8, 2024Jan 8, 2024
    • 3d PyTorch implementation of MAE for the Flylight dataset
      Python
      Other
      1.3k000Updated Dec 18, 2023Dec 18, 2023
    • Python
      12000Updated Dec 18, 2023Dec 18, 2023
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      MIT License
      58000Updated Oct 31, 2023Oct 31, 2023
    • ffn

      Public
      Flood-Filling Networks for instance segmentation in 3d volumes.
      Python
      Apache License 2.0
      103000Updated Oct 29, 2023Oct 29, 2023
    • official implementation of the PatchPerPix instance segmentation method
      Python
      MIT License
      73520Updated Jun 27, 2023Jun 27, 2023
    • experiments script for the PatchPerPix instance segmentation method
      Python
      3800Updated Jun 19, 2023Jun 19, 2023
    • Jupyter Notebook
      Apache License 2.0
      0000Updated Mar 20, 2023Mar 20, 2023
    • Python wrapper for submitting jobs via bsub with the option to do so in a container environment.
      Python
      4000Updated Sep 14, 2022Sep 14, 2022
    • linajea

      Public
      Python
      MIT License
      6000Updated Sep 9, 2022Sep 9, 2022
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