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    27 repositories

    • paraffin-analyzer

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • focus

      Public
      High Throughput Electron Microscopy Image Processing Software
      image-processingqt5electron-microscopy
      image-processingqt5electron-microscopycryo-em
      C++
      •
      GNU General Public License v2.0
      •15•41•47•0•Updated Apr 21, 2026Apr 21, 2026

    • ft

      Public
      Fourier space exploration
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • gitflow-lbem

      Public
      LBEM Edition of the git extensions to provide high-level repository operations for Vincent Driessen's branching model
      Shell
      •
      Other
      •11•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • homebrew-gitflow-lbem

      Public
      Ruby
      •0•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • gitflow-lbem-completion

      Public
      Bash, Zsh and fish completion support for git-flow.
      Shell
      •
      MIT License
      •389•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • mitoanalyzer

      Public
      Groovy
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • py4DSTEM

      Public
      This is a fork of Py4DSTEM for custom implementation into the 4d software.
      Python
      •
      GNU General Public License v3.0
      •174•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • .github

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • myelino

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • 4D-BioSTEM

      Public
      Jupyter Notebook
      •2•5•0•0•Updated Aug 22, 2024Aug 22, 2024

    • clem-for-human-brain

      Public
      ImageJ Macro
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 15, 2024May 15, 2024

    • clem4cina

      Public
      Simple GUI tool based on tkinter to enable coordinate transformation between TEM and LM images.
      cryo-emmicroscopymicroscopy-images
      cryo-emmicroscopymicroscopy-imagesclem
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 11, 2024May 11, 2024

    • focustools

      Public
      Python utilities for the FOCUS package
      signal-processingimage-processingelectron-microscopy
      signal-processingimage-processingelectron-microscopycryo-em3d-reconstructioncompression-application
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Aug 10, 2023Aug 10, 2023

    • frealign-2dx

      Public
      Source code for modified FREALIGN version for processing 2D crystal data
      Fortran
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 2, 2021Jun 2, 2021

    • VisProt

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated Nov 18, 2020Nov 18, 2020

    • TomographyTools

      Public
      Tools and wrappers for cryo-electron tomography processing
      MATLAB
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Apr 30, 2019Apr 30, 2019

    • SerialEM-Notepad-pp

      Public
      HTML
      •
      GNU General Public License v2.0
      •0•2•0•0•Updated Apr 16, 2019Apr 16, 2019

    • Horus

      Public
      C++
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 24, 2017Aug 24, 2017

    • emkit

      Public
      A C++ toolkit for Electron Microscopy
      C++
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated May 17, 2017May 17, 2017

    • zorro

      Public
      Dose-fractionated microscopy image registrator
      Python
      •
      Other
      •3•8•6•0•Updated Dec 22, 2016Dec 22, 2016

    • wxsqlite3

      Public
      wxSQLite3 - SQLite3 database wrapper for wxWidgets (including SQLite3 encryption extension)
      C
      •
      Other
      •188•0•0•0•Updated Oct 19, 2016Oct 19, 2016

    • CINA_Util

      Public
      Various utility scripts used in C-CINA
      Python
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 4, 2015Aug 4, 2015

    • 2dx_PostProcessing

      Public
      Python
      •
      GNU General Public License v2.0
      •0•0•1•0•Updated Jun 2, 2015Jun 2, 2015

    • 2dx_documentation

      Public
      2dx Documentation repo
      TeX
      •
      GNU General Public License v2.0
      •0•0•1•0•Updated May 22, 2015May 22, 2015

    • openBEB_testcases

      Public
      0•0•0•0•Updated Mar 17, 2014Mar 17, 2014

    • 2dx_testcases

      Public
      Test cases for 2dx
      GNU General Public License v2.0
      •0•0•0•0•Updated Feb 10, 2014Feb 10, 2014
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