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    15 repositories

    • structure_output_ensemble_BAP

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • TCRRobustRewardDesign

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Apr 9, 2026Apr 9, 2026

    • immunefold

      Public
      Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Feb 21, 2026Feb 21, 2026

    • Leidos

      Public
      rediction of blunted vaccine responses with pre-vaccine sentinel antibodies
      Jupyter Notebook
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • TCR_structure

      Public
      Fully automated, end-to-end structure prediction and analysis pipeline for generated CDR3β TCR sequences using TCRdock and Rosetta.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • BAP_Attack_n_Defend

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Oct 7, 2025Oct 7, 2025

    • TCRGen

      Public
      Self-Contemplating In-Context Learning Enhances T Cell Receptor Generation for Novel Epitopes
      tcr-epitopegenerative-aitcr-design
      tcr-epitopegenerative-aitcr-design
      Python
      •1•4•0•0•Updated Oct 7, 2025Oct 7, 2025

    • catELMo

      Public
      catELMo: Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions
      language-modeltcr-repertoiretcr-epitope
      language-modeltcr-repertoiretcr-epitopeamino-acid-encoding
      Python
      •
      Other
      •4•15•0•0•Updated Apr 10, 2025Apr 10, 2025

    • Lee-CBG.github.io

      Public
      ResearchWebsite Repo
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • ATM-TCR

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •7•12•2•1•Updated Mar 22, 2024Mar 22, 2024

    • ActiveTCR

      Public
      Official Tensorflow implementation for ActiveTCR: Active Learning Framwork for Cost-Effective TCR-Epitope Binding Affinity Prediction
      tcr-epitopedata-optimization
      tcr-epitopedata-optimization
      Python
      •
      Other
      •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • PiTE

      Public
      PiTE: TCR-epitope Binding Affinity Prediction Pipeline using Transformer-based Sequence Encoder
      sequence-modelstcr-epitope
      sequence-modelstcr-epitope
      Jupyter Notebook
      •
      Other
      •1•4•1•0•Updated Apr 12, 2023Apr 12, 2023

    • python_MHC_parser

      Public
      this is a parser to read in MHC files from ANHIG / IMGTHLA and parse it to certain format requirements.
      Python
      •0•0•0•0•Updated May 3, 2022May 3, 2022

    • bilm-tf

      Public
      Tensorflow implementation of contextualized word representations from bi-directional language models
      Python
      •
      Apache License 2.0
      •447•0•0•0•Updated May 25, 2021May 25, 2021

    • kourami

      Public
      Kourami: Graph-guided assembly for HLA alleles
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •16•0•0•0•Updated Apr 7, 2020Apr 7, 2020
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