Macromolecular Nexus

All

85 repositories

rfpeptides_mcp
Public
RFpeptides MCP server for peptide design
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp protein-engineering peptide-design model-context-protocol
Python
•1•0•0•0•Updated Mar 15, 2026Mar 15, 2026
helm_gpt_mcp
Public
Cyclicpeptide optimization with HELM-GPT
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp generative-model drug-discovery peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 14, 2026Mar 14, 2026
afcycdesign_mcp
Public
AF-CycDesign MCP server for cyclic peptide design with AlphaFold
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp drug-discovery alphafold peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 14, 2026Mar 14, 2026
highfold3_mcp
Public
HighFold3 MCP server for peptide structure prediction
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp structure-prediction peptide-design model-context-protocol
Python
•0•0•0•0•Updated Mar 14, 2026Mar 14, 2026
gnina_mcp
Public
Python
•0•0•0•0•Updated Mar 14, 2026Mar 14, 2026
alphafold3_mcp
Public
AlphaFold3 MCP server for protein structure prediction, supporting batch prediction
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp structure-prediction protein-engineering alphafold model-context-protocol
Python
•0•1•0•0•Updated Mar 12, 2026Mar 12, 2026
boltz_mcp
Public
Boltz2 MCP server for protein structure and affinity prediction
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp structure-prediction protein-engineering affinity-prediction model-context-protocol
Python
•0•2•0•0•Updated Mar 11, 2026Mar 11, 2026
pepflowww_mcp
Public
PepFlowww MCP server for peptide flow-based design
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp generative-model peptide-design model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
multicycgt_mcp
Public
MultiCycGT MCP server for multi-cyclic peptide generation
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp generative-model drug-discovery peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
highplay_mcp
Public
HighPlay MCP server for high-throughput peptide library analysis
bioinformatics mcp drug-discovery
bioinformatics mcp drug-discovery high-throughput peptide-design model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
haddock3_mcp
Public
HADDOCK3 MCP server for biomolecular docking
bioinformatics mcp docking
bioinformatics mcp docking protein-engineering molecular-modeling model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
cycpeptmp_mcp
Public
CycPeptMP MCP server for cyclic peptide membrane permeability prediction
bioinformatics mcp prediction
bioinformatics mcp prediction drug-discovery membrane-permeability peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
cyclicchamp_mcp
Public
CyclicCHAMP MCP server for cyclic peptide modeling
bioinformatics mcp drug-discovery
bioinformatics mcp drug-discovery molecular-modeling peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
cyc_builder_mcp
Public
Cyclic peptide builder MCP server
bioinformatics mcp drug-discovery
bioinformatics mcp drug-discovery molecular-modeling peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
pharmpapp_mcp
Public
PharmPApp MCP server for pharmaceutical peptide property prediction
bioinformatics mcp drug-discovery
bioinformatics mcp drug-discovery property-prediction peptide-design model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
pepflow_mcp
Public
PepFlow MCP server for peptide structure generation
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp generative-model peptide-design model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
multicycpermea_mcp
Public
MultiCycPermea MCP server for cyclic peptide permeability prediction
bioinformatics mcp prediction
bioinformatics mcp prediction drug-discovery membrane-permeability peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
highfold_med_mcp
Public
HighFold-Med MCP server for medical protein structure prediction
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp drug-discovery structure-prediction protein-engineering model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
cyclicpeptide_mcp
Public
Cyclic peptide MCP server for cyclic peptide design and analysis
bioinformatics mcp drug-discovery
bioinformatics mcp drug-discovery peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
boltzgen_mcp
Public
BoltzGen MCP server for protein binder design
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp protein-design protein-engineering model-context-protocol binder-design
Python
•0•1•0•0•Updated Mar 1, 2026Mar 1, 2026
adcp_mcp
Public
ADCP MCP server for antibody-dependent cellular phagocytosis prediction
bioinformatics mcp immunology
bioinformatics mcp immunology antibody protein-engineering model-context-protocol
Python
•0•0•0•0•Updated Mar 1, 2026Mar 1, 2026
rosetta_kic_mcp
Public
Rosetta MCP for cyclic peptide design with kic
bioinformatics mcp drug-discovery
bioinformatics mcp drug-discovery rosetta peptide-design model-context-protocol cyclic-peptide
Python
•0•1•0•0•Updated Feb 23, 2026Feb 23, 2026
cpmp_mcp
Public
CPMP MCP server for cyclic peptide membrane permeability prediction
bioinformatics mcp prediction
bioinformatics mcp prediction drug-discovery membrane-permeability peptide-design model-context-protocol cyclic-peptide
Python
•0•0•0•0•Updated Feb 23, 2026Feb 23, 2026
rosetta_mcp
Public
Rosetta MCP server for molecular modeling and protein design
bioinformatics mcp rosetta
bioinformatics mcp rosetta protein-design protein-engineering molecular-modeling model-context-protocol
Python
•0•0•0•0•Updated Feb 23, 2026Feb 23, 2026
proteinmpnn_mcp
Public
ProteinMPNN MCP server for protein sequence design (inverse folding)
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp protein-design inverse-folding protein-engineering sequence-design model-context-protocol
Python
•0•1•0•0•Updated Feb 23, 2026Feb 23, 2026
ligandmpnn_mcp
Public
LigandMPNN MCP server for ligand-aware scaffold-based sequence generation (inverse folding)
bioinformatics deep-learning mcp
bioinformatics deep-learning mcp protein-design inverse-folding protein-engineering sequence-design model-context-protocol
Python
•0•0•0•0•Updated Feb 23, 2026Feb 23, 2026
gromacs_mcp
Public
GROMACS MCP server for molecular dynamics simulations
bioinformatics simulation mcp
bioinformatics simulation mcp molecular-dynamics gromacs protein-engineering model-context-protocol
Python
•0•0•1•0•Updated Feb 23, 2026Feb 23, 2026
amber_mcp
Public
AMBER MCP server for molecular dynamics simulations and analysis
bioinformatics simulation mcp
bioinformatics simulation mcp molecular-dynamics amber protein-engineering model-context-protocol
Python
•0•0•0•0•Updated Feb 23, 2026Feb 23, 2026
netmhc2pan_mcp
Public
NetMHCIIpan MCP server for MHC Class II binding prediction
bioinformatics mcp immunology
bioinformatics mcp immunology mhc immunoinformatics protein-engineering epitope-prediction model-context-protocol
Python
•0•0•0•0•Updated Feb 22, 2026Feb 22, 2026
netmhcpan_mcp
Public
NetMHCpan MCP server for MHC Class I binding prediction
bioinformatics mcp immunology
bioinformatics mcp immunology mhc immunoinformatics protein-engineering epitope-prediction model-context-protocol
Python
•0•0•0•0•Updated Feb 22, 2026Feb 22, 2026

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.