Repositories list

• nrefocus

  Public
  python library for numerical focusing (refocusing, autofocusing) of complex wave fields

  microscopybiophysicsholography+ 3

  microscopybiophysicsholographyquantitative-phase-imagingnumerical-focusingautofocusing

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •44 forks•1010 stars•99 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• qpretrieve

  Public
  Phase retrieval from holograms

  Python

  •

  MIT License

  •33 forks•66 stars•44 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• radontea

  Public
  python library for tomographic image reconstruction

  tomographybackprojectionradon-transform

  tomographybackprojectionradon-transform

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •88 forks•1717 stars•11 issue•00 pull requests•Updated Nov 3, 2025Nov 3, 2025

• ODTbrain

  Public
  Python library for diffraction tomography with the Born and Rytov approximations

  backpropagationbiophysicsdiffraction-tomography+ 1

  backpropagationbiophysicsdiffraction-tomographysingle-cell-imaging

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1313 forks•5555 stars•77 issues•00 pull requests•Updated Mar 31, 2025Mar 31, 2025

• qpformat

  Public
  Python library for opening quantitative phase imaging file formats

  pythonfile-formatmicroscopy+ 2

  pythonfile-formatmicroscopyholographyquantitative-phase-imaging

  Python

  •

  MIT License

  •22 forks•11 star•33 issues•00 pull requests•Updated Feb 7, 2025Feb 7, 2025

• flimage

  Public
  Python library for manipulating fluorescence microscopy series data

  Python

  •

  MIT License

  •22 forks•00 stars•11 issue•00 pull requests•Updated Feb 7, 2025Feb 7, 2025

• CellReel

  Public
  graphical user interface for refractive index and fluorescence tomography

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•1515 issues•00 pull requests•Updated Feb 6, 2025Feb 6, 2025

• cellsino

  Public
  Python library for generating sinograms (phase and fluorescence) of cell phantoms for testing tomographic reconstruction algorithms

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•44 stars•44 issues•00 pull requests•Updated Feb 6, 2025Feb 6, 2025

• DryMass

  Public
  manipulation and analysis of phase microscopy data

  microscopyholographycell-analysis+ 2

  microscopyholographycell-analysisrefractive-indexquantitative-phase-imaging

  Python

  •

  MIT License

  •11 fork•33 stars•55 issues•00 pull requests•Updated Feb 6, 2025Feb 6, 2025

• qpsphere

  Public
  Python library for spheres in quantitative phase imaging

  microscopyphythonholography+ 4

  microscopyphythonholographyrefractive-indexquantitative-phase-imagingdigital-holographic-microscopysingle-cell-analysis

  Python

  •

  MIT License

  •22 forks•66 stars•44 issues•00 pull requests•Updated Feb 6, 2025Feb 6, 2025

• qpimage

  Public
  Python library for manipulating quantitative phase images

  pythonmicroscopyholography+ 3

  pythonmicroscopyholographyquantitative-phase-imagingelectron-holographydigital-holographic-microscopy

  Python

  •

  MIT License

  •44 forks•11 star•33 issues•00 pull requests•Updated Feb 6, 2025Feb 6, 2025

• FDTD_sinogram

  Public
  C++ scripts and Python wrappers for diffraction-tomographic sinogram generation using MEEP

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•33 stars•11 issue•00 pull requests•Updated Jun 29, 2020Jun 29, 2020

• QPI-data

  Public archive
  example data for quantitative phase imaging

  22 forks•00 stars•00 issues•00 pull requests•Updated Sep 19, 2019Sep 19, 2019

• bornscat

  Public archive
  python library to compute forward scattering with the Born and Rytov approximations

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •33 forks•88 stars•00 issues•00 pull requests•Updated Feb 4, 2019Feb 4, 2019

• QPI-binaries

  Public
  Binaries of programs useful in quantitative phase imaging

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 8, 2017Dec 8, 2017

• miefield

  Public archive
  python library to compute near field behind cylindrical scatterers using Mie theory

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•22 stars•11 issue•00 pull requests•Updated Jul 28, 2017Jul 28, 2017