Repositories list

• BRAINcode

  Public
  Script and pipeline for BRAINcode project

  HTML

  •55 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• EVscope

  Public
  A Comprehensive Pipeline for Total RNA Sequencing Analysis of Extracellular Vesicles

  circrnaevrnaseq-pipeline+ 2

  circrnaevrnaseq-pipelinesmall-rna-analysisextracelluar-vesicle

  Python

  •

  Other

  •00 forks•00 stars•22 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• VizIt

  Public
  VizIt! - An open-source toolkit for visualizing your single-cell multi-omics data online easily

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• PD5D_UCSC_trackHub

  Public
  This repository is for trackhub which contains the information for ATAC-seq and RNA-seq

  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• ReRx

  Public
  ReRx is a drug repurposing toolkit that identifies disease-protective or disease-prone drugs by analyzing medication usage patterns across multiple cohorts.

  R

  •00 forks•00 stars•00 issues•11 pull request•Updated Sep 2, 2025Sep 2, 2025

• onboarding

  Public
  Onboarding materials for the Dong Lab

  Creative Commons Zero v1.0 Universal

  •2424 forks•00 stars•00 issues•00 pull requests•Updated Jan 8, 2025Jan 8, 2025

• brainPAS

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 24, 2024Oct 24, 2024

• SpatialTranscriptomics

  Public
  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 1, 2024Feb 1, 2024

• enHunter

  Public
  A pipeline to identify enhancer RNAs (eRNAs) from total RNA-seq data

  Shell

  •00 forks•44 stars•00 issues•00 pull requests•Updated Nov 30, 2023Nov 30, 2023