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    387 repositories

    • voice-stream-io

      Public
      VoICE streaming service. Allows multiple input file formats to be streamed to POJOS in a very performant way.
      Java
      •
      Apache License 2.0
      •0•0•1•0•Updated Apr 24, 2026Apr 24, 2026

    • deeplearning-image-analysis-workshop

      Public
      Notebooks for the workshop Advanced Machine learning with Python
      imaging-solutions
      imaging-solutions
      CSS
      •
      MIT License
      •0•1•0•0•Updated Apr 24, 2026Apr 24, 2026

    • outcrossSimulator

      Public
      Simulator for outcross mice
      R
      •
      Other
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • jds-ui-toolkit

      Public
      The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages acr…
      TypeScript
      •
      MIT License
      •0•0•1•1•Updated Apr 23, 2026Apr 23, 2026

    • hpo-web

      Public
      a web application to search and navigate the Human Phenotype Ontology (HPO)
      groovyangularhpo
      groovyangularhpograils3
      HTML
      •
      Other
      •13•14•10•2•Updated Apr 22, 2026Apr 22, 2026

    • DccXmlGenerator

      Public
      This is the Python version of the DCC XML file generator.
      Python
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • image-processing-ia

      Public
      Image Processing with Python
      HTML
      •
      Other
      •126•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • envisionR

      Public
      R library for analysis of datasets from the JAX Envision™ platform
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • jds-nf-test

      Public
      Repository for hosting test data for cs-nf-pipelines
      MIT License
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • ClintLR

      Public
      Clinical intuition with likelihood ratios
      Java
      •
      MIT License
      •1•6•1•0•Updated Apr 17, 2026Apr 17, 2026

    • imaging-applications-documentation

      Public
      Creative Commons Attribution 4.0 International
      •0•1•0•1•Updated Apr 15, 2026Apr 15, 2026

    • Galaxy_Tools_CBA

      Public
      This is the Python and config files for the CBA tools deployed in Galaxy
      Python
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • ChIA-PIPE_nextflow

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • LIRICAL

      Public
      LIkelihood Ratio Interpretation of Clinical AbnormaLities
      Java
      •
      Other
      •14•41•9•2•Updated Apr 9, 2026Apr 9, 2026

    • sennet-demo

      Public
      Demo notebooks for using SenNet data
      Jupyter Notebook
      •
      MIT License
      •2•4•0•0•Updated Mar 26, 2026Mar 26, 2026

    • STQ

      Public
      Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
      spatial-transcriptomicsrna-velocityvisium
      spatial-transcriptomicsrna-velocityvisiumxenomehe-stained-wsixengsortspecies-deconvolution
      Python
      •
      MIT License
      •4•25•2•0•Updated Mar 23, 2026Mar 23, 2026

    • nf-tenx

      Public
      All 10x Genomics processing pipelines rolled into one containerized pipelines
      bioinformaticspipeline
      bioinformaticspipeline
      Groovy
      •
      MIT License
      •1•8•4•1•Updated Mar 20, 2026Mar 20, 2026

    • geneweaver-db

      Public
      The GeneWeaver database interaction code.
      sqlgenomicsfunctional-genomics
      sqlgenomicsfunctional-genomicsgenomic-data-sciencegeneweaver
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Mar 20, 2026Mar 20, 2026

    • NBL1

      Public
      This is a repository for code used in the manuscript titled "NBL1 Associates with Renal Phenotypes in Mice, but Partial Nbl1 Reduction Does Not Ameliorate Kidne…
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • geneweaver-api

      Public
      A system for the integration and analysis of heterogeneous functional genomics data.
      genomicsanalysisfunctional-genomics
      genomicsanalysisfunctional-genomicsgenomic-data-science
      Python
      •
      Apache License 2.0
      •0•6•0•1•Updated Mar 12, 2026Mar 12, 2026

    • jax-apml-lrs

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • pdxnet-image-analysis-aacr2022

      Public
      Regional classification and other analysis of PDXNet H&E images for AACR 2022
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • ontology-service

      Public
      A generic ontology term microservice
      Java
      •3•9•5•0•Updated Mar 3, 2026Mar 3, 2026

    • jax-omeroutils

      Public
      A module and scripts for working with OMERO
      omeroomero-importimaging-solutions
      omeroomero-importimaging-solutions
      Python
      •
      GNU General Public License v2.0
      •3•6•4•1•Updated Mar 2, 2026Mar 2, 2026

    • Phenomiser

      Public
      Phenotype-based Diagnosis Tool for Rare Diseases
      Java
      •5•13•6•2•Updated Mar 2, 2026Mar 2, 2026

    • jds-nf-workflows

      Public
      The Jackson Laboratory Data Science Nextflow based analysis workflows
      Nextflow
      •
      MIT License
      •11•25•0•0•Updated Feb 27, 2026Feb 27, 2026

    • geneweaver-legacy

      Public
      JavaScript
      •0•1•31•1•Updated Feb 23, 2026Feb 23, 2026

    • ontology-annotation-network

      Public
      A rest-api to serve a neo4j database of supported ontology annotations.
      Java
      •
      Other
      •2•3•0•0•Updated Feb 11, 2026Feb 11, 2026

    • umi-bulk-rna-simulator

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • 2026-04-26-multiomics-course

      Public
      A course website for the Short Course on Methods for Multiomics Analysis, April 26-May in Bar Harbor
      HTML
      •
      Other
      •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
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