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    • VoICE streaming service. Allows multiple input file formats to be streamed to POJOS in a very performant way.
      Java
      Apache License 2.0
      0010Updated Apr 24, 2026Apr 24, 2026
    • Notebooks for the workshop Advanced Machine learning with Python
      CSS
      MIT License
      0100Updated Apr 24, 2026Apr 24, 2026
    • Simulator for outcross mice
      R
      Other
      0000Updated Apr 23, 2026Apr 23, 2026
    • The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages acr…
      TypeScript
      MIT License
      0011Updated Apr 23, 2026Apr 23, 2026
    • hpo-web

      Public
      a web application to search and navigate the Human Phenotype Ontology (HPO)
      HTML
      Other
      1314102Updated Apr 22, 2026Apr 22, 2026
    • This is the Python version of the DCC XML file generator.
      Python
      0000Updated Apr 21, 2026Apr 21, 2026
    • Image Processing with Python
      HTML
      Other
      126000Updated Apr 21, 2026Apr 21, 2026
    • envisionR

      Public
      R library for analysis of datasets from the JAX Envision™ platform
      HTML
      GNU General Public License v3.0
      0000Updated Apr 17, 2026Apr 17, 2026
    • Repository for hosting test data for cs-nf-pipelines
      MIT License
      0000Updated Apr 17, 2026Apr 17, 2026
    • ClintLR

      Public
      Clinical intuition with likelihood ratios
      Java
      MIT License
      1610Updated Apr 17, 2026Apr 17, 2026
    • Creative Commons Attribution 4.0 International
      0101Updated Apr 15, 2026Apr 15, 2026
    • This is the Python and config files for the CBA tools deployed in Galaxy
      Python
      0000Updated Apr 14, 2026Apr 14, 2026
    • Nextflow
      MIT License
      0000Updated Apr 10, 2026Apr 10, 2026
    • LIRICAL

      Public
      LIkelihood Ratio Interpretation of Clinical AbnormaLities
      Java
      Other
      144192Updated Apr 9, 2026Apr 9, 2026
    • Demo notebooks for using SenNet data
      Jupyter Notebook
      MIT License
      2400Updated Mar 26, 2026Mar 26, 2026
    • STQ

      Public
      Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
      Python
      MIT License
      42520Updated Mar 23, 2026Mar 23, 2026
    • nf-tenx

      Public
      All 10x Genomics processing pipelines rolled into one containerized pipelines
      Groovy
      MIT License
      1841Updated Mar 20, 2026Mar 20, 2026
    • The GeneWeaver database interaction code.
      Python
      Apache License 2.0
      0200Updated Mar 20, 2026Mar 20, 2026
    • NBL1

      Public
      This is a repository for code used in the manuscript titled "NBL1 Associates with Renal Phenotypes in Mice, but Partial Nbl1 Reduction Does Not Ameliorate Kidne…
      R
      MIT License
      0000Updated Mar 18, 2026Mar 18, 2026
    • A system for the integration and analysis of heterogeneous functional genomics data.
      Python
      Apache License 2.0
      0601Updated Mar 12, 2026Mar 12, 2026
    • Nextflow
      MIT License
      0000Updated Mar 10, 2026Mar 10, 2026
    • Regional classification and other analysis of PDXNet H&E images for AACR 2022
      Jupyter Notebook
      MIT License
      0000Updated Mar 9, 2026Mar 9, 2026
    • A generic ontology term microservice
      Java
      3950Updated Mar 3, 2026Mar 3, 2026
    • A module and scripts for working with OMERO
      Python
      GNU General Public License v2.0
      3641Updated Mar 2, 2026Mar 2, 2026
    • Phenotype-based Diagnosis Tool for Rare Diseases
      Java
      51362Updated Mar 2, 2026Mar 2, 2026
    • The Jackson Laboratory Data Science Nextflow based analysis workflows
      Nextflow
      MIT License
      112500Updated Feb 27, 2026Feb 27, 2026
    • JavaScript
      01311Updated Feb 23, 2026Feb 23, 2026
    • A rest-api to serve a neo4j database of supported ontology annotations.
      Java
      Other
      2300Updated Feb 11, 2026Feb 11, 2026
    • Python
      MIT License
      0100Updated Feb 2, 2026Feb 2, 2026
    • A course website for the Short Course on Methods for Multiomics Analysis, April 26-May in Bar Harbor
      HTML
      Other
      0000Updated Jan 30, 2026Jan 30, 2026
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