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@babelomics Joaquin Dopazo

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    54 repositories

    • SMAca

      Public
      SMN1 copy-number and sequence variant analysis from next generation sequencing data
      Python
      •
      GNU General Public License v3.0
      •7•23•2•0•Updated Feb 20, 2026Feb 20, 2026

    • SFtool

      Public
      Secondary Findings tool
      Python
      •0•1•1•0•Updated Feb 12, 2026Feb 12, 2026

    • bps_to_omop

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • metabopathia

      Public
      Jupyter Notebook
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • pmc_maqc-ml

      Public
      Python
      •0•0•1•0•Updated Aug 18, 2025Aug 18, 2025

    • SNO_proteomics

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • SpPGS

      Public
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • hipathia_web

      Public
      Web interface to HiPathia
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•5•Updated May 25, 2025May 25, 2025

    • predoc

      Public
      Machine learning model using EHR data from Andalusia (15M individuals) for early prediction of high-grade serous ovarian cancer (HGSOC) risk.
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • PharmGKB2MGI

      Public
      R
      •1•0•0•0•Updated Apr 6, 2025Apr 6, 2025

    • signor2Hipathia

      Public
      In this project, we aim to integrate pathways from the Signor database to make them compatible with the Hipathia method. Here is an overview of the project and …
      HTML
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • Metabolica

      Public
      R
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • beacon2-app-virus

      Public
      Implementation of a Beacon v2 customized for SARS-COV-2
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • biomedical-integrator-impactData

      Public
      Source code of the Biomedical Data integration demo developed in IMPaCT-Data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • CSVS

      Public
      Population Variant Server
      JavaScript
      •
      GNU General Public License v2.0
      •3•5•1•4•Updated Nov 27, 2024Nov 27, 2024

    • stevia-elements

      Public
      HTML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • TCGA_SARC

      Public
      R
      •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • ivae_scorer

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Dec 30, 2023Dec 30, 2023

    • drexml-retinitis

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Dec 27, 2023Dec 27, 2023

    • sigprimednet

      Public
      Jupyter Notebook
      •1•1•0•1•Updated Sep 23, 2023Sep 23, 2023

    • signalization_prior_knowledge_based_nn

      Public
      Jupyter Notebook
      •2•2•0•0•Updated Sep 23, 2023Sep 23, 2023

    • metabolizer

      Public
      Web tool to analyze transcriptomic (and mutational) data in the context of metabolic pathways
      HTML
      •0•2•1•0•Updated Jun 12, 2023Jun 12, 2023

    • SPACNACS

      Public
      JavaScript
      •0•0•0•0•Updated May 24, 2023May 24, 2023

    • ngscat2

      Public
      Improved version of Next Generation Sequencing data Capture Assessment Tool (ngsCAT)
      Python
      •3•0•1•3•Updated Dec 8, 2022Dec 8, 2022

    • impuSARS

      Public
      Software tool for the imputation of whole-genome SARS-CoV-2 sequences.
      Shell
      •
      MIT License
      •0•4•2•0•Updated Nov 28, 2022Nov 28, 2022

    • MIGNON

      Public
      Mechanistic integrative analysis of RNA-Seq data
      WDL
      •
      MIT License
      •6•7•1•0•Updated Nov 6, 2022Nov 6, 2022

    • sptest

      Public
      HiveQL
      •1•0•0•0•Updated Oct 7, 2022Oct 7, 2022

    • hipathia

      Public
      Signaling pathway model
      R
      •2•7•0•0•Updated Jul 27, 2022Jul 27, 2022

    • metagenomic-crc

      Public
      HTML
      •
      MIT License
      •3•4•0•0•Updated Apr 20, 2022Apr 20, 2022

    • mmp-cancer

      Public
      Backend services for MMP-Cancer
      Java
      •0•0•0•0•Updated Mar 21, 2022Mar 21, 2022
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