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    58 repositories

    • openapi3

      Public
      OpenAPI 3.0 data model
      hacktoberfest
      hacktoberfest
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •67•46•38•24•Updated Apr 22, 2026Apr 22, 2026

    • chemnext-trainee-test-case

      Public
      Test case for 2024 Winter Internship
      1•5•0•0•Updated Feb 26, 2026Feb 26, 2026

    • cobot-io

      Public
      Biological data file formats and IO
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•5•1•Updated Feb 2, 2026Feb 2, 2026

    • two-window-cell-painting-analysis

      Public
      This repository contains Python code to reproduce the core analysis described in the manuscript: "A stability-weighted combined map for Cell Painting across reg…
      Jupyter Notebook
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • web-template

      Public
      Template for web applications on haskell
      stackageproject-passport
      stackageproject-passport
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated Sep 27, 2025Sep 27, 2025

    • disjoint-set

      Public
      Disjoint Sets in Haskell
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Sep 15, 2025Sep 15, 2025

    • career

      Public
      Список вакансий в Департаменте Вычислительной Биологии в компании BIOCAD
      haskellbioinformaticsreactjs
      haskellbioinformaticsreactjscudamathematicsjobscomputational-biology
      8•41•0•0•Updated Jun 16, 2025Jun 16, 2025

    • servant-openapi3

      Public
      OpenAPI 3.0 for Servant
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •36•44•15•10•Updated May 18, 2025May 18, 2025

    • REINVENT4

      Public
      AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.
      Python
      •
      Apache License 2.0
      •209•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • CUBA

      Public
      🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
      Vue
      •
      Other
      •3•0•0•0•Updated Mar 4, 2024Mar 4, 2024

    • cuq

      Public
      CUDA multi-GPU concurrent tasks queue
      C++
      •
      MIT License
      •4•0•0•0•Updated Dec 28, 2023Dec 28, 2023

    • ProteinMPNN

      Public
      Code for the ProteinMPNN paper
      Jupyter Notebook
      •
      MIT License
      •459•0•0•2•Updated Dec 13, 2023Dec 13, 2023

    • openid-connect

      Public
      An OpenID Connect library that does all the heavy lifting for you
      Haskell
      •
      BSD 2-Clause "Simplified" License
      •11•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • deeprank

      Public
      Deep learning framework for data mining protein-protein interactions using CNN
      Python
      •
      Apache License 2.0
      •24•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • hasbolt-extras

      Public
      Extras for hasbolt library
      semantic-system
      semantic-system
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •9•8•2•1•Updated Sep 28, 2023Sep 28, 2023

    • equidock_public

      Public
      EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
      Roff
      •
      MIT License
      •59•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • DiffDock-PP

      Public
      Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
      Python
      •43•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • cobot

      Public
      Computational biology toolkit to collaborate with researchers in constructive protein engineering
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •6•6•4•1•Updated Jul 19, 2023Jul 19, 2023

    • IgFold

      Public
      Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
      Python
      •
      Other
      •71•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • PiFold

      Public
      The official implementation of the ICLR'2023 paper PiFold: Toward effective and efficient protein inverse folding.
      Python
      •
      MIT License
      •19•0•0•0•Updated Jun 17, 2023Jun 17, 2023

    • reinvent-scoring

      Public
      Python
      •
      Apache License 2.0
      •18•0•0•1•Updated Mar 16, 2023Mar 16, 2023

    • reinvent-chemistry

      Public
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Mar 14, 2023Mar 14, 2023

    • servant-swagger

      Public
      Swagger for Servant
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •34•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • Lib-INVENT

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •33•0•0•0•Updated Mar 12, 2023Mar 12, 2023

    • Deeprank-GNN

      Public
      Graph Network for protein-protein interface
      Python
      •
      Apache License 2.0
      •32•0•0•1•Updated Feb 9, 2023Feb 9, 2023

    • math-grads

      Public
      A Haskell library of GRaph Algorithms and Data Structures
      graphgraph-algorithmsgraph-isomorphism
      graphgraph-algorithmsgraph-isomorphismstackage
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•18•1•0•Updated Feb 3, 2023Feb 3, 2023

    • Ankh

      Public
      Ankh: Optimized Protein Language Model
      Python
      •
      Other
      •22•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • EnQA

      Public
      A 3D-equivariant neural network for protein structure accuracy estimation
      Shell
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Jan 11, 2023Jan 11, 2023

    • DProQ

      Public
      Deep learning prediction of protein complex structure quality
      Python
      •
      MIT License
      •4•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • CSM

      Public
      Python
      •1•0•0•0•Updated Jul 11, 2022Jul 11, 2022
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