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    113 repositories

    • Bio-DB-SeqFeature

      Public
      Perl
      •2•1•1•0•Updated Nov 4, 2025Nov 4, 2025

    • bioperl-live

      Public
      Core BioPerl 1.x code
      bioinformaticstoolkitperl
      bioinformaticstoolkitperlbioperl
      Perl
      •184•317•59•4•Updated Sep 3, 2025Sep 3, 2025

    • p5-bpwrapper

      Public
      BioPerl scripts and utilities
      Perl
      •
      Other
      •4•11•0•1•Updated Sep 2, 2025Sep 2, 2025

    • Bio-SeqIO-tinyseq

      Public
      Perl
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • Bio-SearchIO-Writer-BSMLResultWriter

      Public
      BioPerl BSML BLAST Result Writer
      Perl
      •0•1•1•0•Updated Apr 23, 2025Apr 23, 2025

    • Bio-SeqIO-locuslink

      Public
      Perl
      •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

    • Bio-TreeIO-phyloxml

      Public
      Perl
      •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

    • Bio-SeqIO-seqxml

      Public
      Perl
      •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

    • Bio-SeqIO-game

      Public
      Perl
      •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

    • Bio-EUtilities

      Public
      Low-level OO Perl interface for NCBI's eutils
      Perl
      •6•4•2•0•Updated Apr 10, 2025Apr 10, 2025

    • Bio-DB-NCBIHelper

      Public
      BioPerl modules for accessing data from NCBI
      Perl
      •3•0•2•1•Updated Dec 15, 2023Dec 15, 2023

    • Bio-Biblio

      Public
      Bio-Biblio
      Perl
      •3•3•0•0•Updated Feb 8, 2023Feb 8, 2023

    • Bio-DB-Taxonomy-sqlite

      Public
      Perl
      •0•0•0•0•Updated Apr 1, 2022Apr 1, 2022

    • bioperl-run

      Public
      BioPerl wrappers
      Perl
      •
      Other
      •18•36•34•2•Updated Apr 25, 2021Apr 25, 2021

    • Bio-Tools-Run-RemoteBlast

      Public
      BioPerl interface to a remote BLAST server
      Perl
      •1•1•0•0•Updated Feb 28, 2021Feb 28, 2021

    • Bio-SeqIO-interpro

      Public
      XML-based InterPro parser
      Perl
      •0•2•0•0•Updated Feb 3, 2021Feb 3, 2021

    • Bio-SearchIO-hmmer

      Public
      BioPerl parser to HMMER output
      Perl
      •0•1•0•0•Updated Sep 16, 2020Sep 16, 2020

    • Bio-FeatureIO

      Public
      Sequence Feature streams
      Perl
      •9•4•8•0•Updated Feb 7, 2020Feb 7, 2020

    • Bio-DB-GFF

      Public
      Perl
      •1•0•1•0•Updated Jan 8, 2020Jan 8, 2020

    • Bio-Variation

      Public
      Perl
      •0•0•0•0•Updated Jan 8, 2020Jan 8, 2020

    • Bio-DB-RefSeq

      Public
      Perl
      •0•0•1•0•Updated Dec 7, 2019Dec 7, 2019

    • Bio-DB-SwissProt

      Public
      Perl
      •0•1•0•0•Updated Dec 7, 2019Dec 7, 2019

    • Bio-Procedural

      Public
      Procedural interface to a subset of the BioPerl functionality
      Perl
      •0•0•0•0•Updated Dec 5, 2019Dec 5, 2019

    • Bio-DB-HIV

      Public
      BioPerl interface to the Los Alamos HIV Sequence Database
      Perl
      •0•0•0•0•Updated Oct 16, 2019Oct 16, 2019

    • bioperl.github.io

      Public
      The BioPerl Web site: http://bioperl.org
      CSS
      •8•14•9•0•Updated Aug 29, 2019Aug 29, 2019

    • Bio-Restriction

      Public
      BioPerl distribution for restriction enzymes
      Perl
      •1•0•4•1•Updated Jun 17, 2019Jun 17, 2019

    • .github

      Public
      Community default repo
      0•0•0•0•Updated May 30, 2019May 30, 2019

    • Bio-DB-EMBL

      Public
      BioPerl modules for accessing data from EMBL-EBI
      Perl
      •0•0•1•0•Updated Mar 4, 2019Mar 4, 2019

    • Bio-DB-BioFetch

      Public
      Perl
      •0•0•1•0•Updated Feb 19, 2019Feb 19, 2019

    • bioperl-pipeline

      Public
      Analysis pipelines from wrappers
      Perl
      •
      Other
      •2•4•0•0•Updated Feb 14, 2019Feb 14, 2019
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