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    7 repositories

    • Phasis

      Public
      Computational framework for discovery and classification of phased small RNA loci in plants.
      bioinformaticssrnaplant-biology
      bioinformaticssrnaplant-biologysrna-seqphasirna
      Python
      •
      Other
      •0•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • plantcv-tasselyzer-tutorial

      Public
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • miTRATA

      Public
      miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • phasiRNAClassifier

      Public
      Multi-modal Machine learning based pipeline using NLP -Bag-of-Words to identify sequence-based and structural features that distinguish phasiRNAs from other sma…
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 29, 2018Nov 29, 2018

    • PHASIS_forked

      Public
      Suite for phased clusters discovery, comparison, annotation and to identify miRNA triggers - uses MapReduce model [In review]
      Python
      •
      Other
      •8•0•0•0•Updated Sep 3, 2018Sep 3, 2018

    • sPARTA

      Public
      miRNA-target prediction and PARE-seq based validation tool - uses MapReduce model [Published]
      Python
      •
      Other
      •7•0•0•0•Updated Nov 4, 2017Nov 4, 2017

    • preprocess.seq

      Public
      Parallelized pipeline for pre-processing (Illumina) and quality assessment of sequencing libraries [Published]
      Python
      •
      Other
      •2•0•0•0•Updated Jul 11, 2017Jul 11, 2017
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